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. 2023 Feb;33(2):208–217. doi: 10.1101/gr.276655.122

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© 2023 O'Connell et al.; Published by Cold Spring Harbor Laboratory Press

This article, published in Genome Research, is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

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Figure 5. — sciATACv3 integration and interneuron subtyping. (A) UMAP of GABAergic neurons colored by cluster and by (B) subtype. (C) Imputed gene activity scores for subtype-defining marker genes, and (D) marker gene accessibility tracks. (E) Integration with other mouse brain single-cell ATAC-seq data sets as well as paired data set integrations. (F) Called clusters on the integrated dscATAC and nanowell sciATACv3 data sets. Despite poor visualization, only 2.3% of cells are in method-specific clusters.