Table 1.
Genes present in chloroplast genome of Secale cereale ssp. segetale. Genes list arranged alphabetically.
| Category | Group of gene | Name of genes |
|---|---|---|
| Photosynthesis | Photosystem I | psaA, psaB, psaC, psaI, psaJ |
| Photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| Cytochrome complex | petA, petB, petD, petG, petL, petN | |
| ATP synthase | atpA, atpB, atpE, atpFc, atpH, atpI | |
| NADH dehydrogenase | ndhAc, ndhBc (× 2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhHb (2x), ndhI, ndhJ, ndhK | |
| Large subunit of RUBISCO | rbcL | |
| DNA replication and protein synthesis | Ribosomal RNA | rrn4.5 (× 2), rrn5 (× 2), rrn16 (× 2), rrn23 (× 2) |
| Small subunit ribosomal proteins | rps2, rps3, rps4, rps7 (× 2), rps8, rps11, rps12e, rps14, rps15(× 2), rps16c, rps18, rps19 (× 2) | |
| Large subunit ribosomal proteins | rpl2c (× 2), rpl14, rpl16, rpl20, rpl22, rpl23b (× 3), rpl32, rpl33, rpl36 | |
| RNA polymerase subunits | rpoA, rpoB, rpoC1, rpoC2 | |
| Translational initiation factor | infA | |
| Transfer RNA |
trnA-UGC c(× 2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnfM-AUG, trnG-UCCc (× 2), trnH-GUG (× 2), trnI-CAU (× 2), trnI-GAUc (× 2), trnK-UUUc, trnL-CAA (× 2), trnL-CUA, trnL-UAAc, trnM-CAU, trnN-GUU (× 2), trnP-UGG, trnQ-UUG, trnR-ACG (× 2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC (× 2), trnV-UACc, trnW-CCA, trnY-GUA |
|
| Other genes | Conserved hypothetical chloroplast ORF | ycf2 (× 2), ycf3ad, ycf4a, ycf15 (× 2), ycf68 (× 2) |
| Other proteins | ccsA, cemA, clpP, matK |
aGenes associated with Photosystem I.
bOne copy of the gene is a pseudogene.
cGene containing one intron.
dGene containing two introns.
eTransspliced gene.