REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Anti human CD3 monoclonal antibody (clone: OKT3), Alexa Fluor™ 700 | eBioscience | Cat. # 56-0037-42 |
Anti human CD8a monoclonal antibody (clone: OKT8) APC-eFluor™ 780 | eBioscience | Cat. # 47-0086-42 |
Fixable Viability Dye eFluor 506 | eBioscience | Cat. # 65-0866-14 |
Anti human CD45RA monoclonal antibody (clone: HI100) Super Bright™ 645 | eBioscience | Cat. # 64-0458-42 |
Anti human CD45RO monoclonal antibody (clone: UCHL1) PE-eFluor™ 610 | eBioscience | Cat. # 61-0457-42 |
Anti human CD27 monoclonal antibody (clone: O323) Super Bright™ 780 | eBioscience | Cat. # 78-0279-42 |
Anti human CD57 monoclonal antibody (clone: QA17A04) Brilliant Violet 711™ |
BioLegend | Cat. # 393328 |
Anti human IFNγ monoclonal antibody (clone: 4S.B3) FITC | eBioscience | Cat. # 11-7319-82 |
Anti human TNFα monoclonal antibody (clone: MAb11) PE-Cyanine7 | eBioscience | Cat. # 25-7349-82 |
Anti human IL-2 monoclonal antibody (clone: MQ1-17H12) APC | eBioscience | Cat. # 17-7029-82 |
Anti human Granzyme B monoclonal antibody (clone: N4TL33) PE | eBioscience | Cat. # 12-8896-42 |
Fixable Viability Dye eFluor™ 780 | eBioscience | Cat. # 65-0865-14 |
Anti human KIR2D monoclonal antibody (clone: NKVFS1) FITC | Miltenyi Biotec | Cat. # 130-092-687 |
Anti human CD8a monoclonal antibody (clone: RPA-T8) PerCP-Cyanine5.5 | eBioscience | Cat. # 45-0088-42 |
Anti human CD45 monoclonal antibody (clone: HI30) PE-Cyanine7 | eBioscience | Cat. # 25-0459-42 |
Anti human HLA-A2 monoclonal antibody (clone: BB7.2) PE-Cyanine7 | eBioscience | Cat. # 25-9876-42 |
Anti human HLA-A3 monoclonal antibody (clone: GAP.A3) APC | eBioscience | Cat. # 17-5754-42 |
Anti human CD3 monoclonal antibody (clone: OKT3) FITC | eBioscience | Cat. # 11-0037-42 |
Anti human CD4 monoclonal antibody (clone: OKT4) PerCP-Cyanine5.5 | eBioscience | Cat. # 45-0048-42 |
Anti human CD96 (TACTILE) monoclonal antibody (clone: NK92.39) PE-Cyanine7 | BioLegend | Cat. # 338415 |
Anti human CD197 (CCR7) monoclonal antibody (clone: G043H7) Brilliant Violet 421™ | BioLegend | Cat. # 353207 |
Anti human CD7 monoclonal antibody (clone: REA1244) PerCP-Vio® 700 | Miltenyi Biotec | Cat. # 130-124-937 |
Anti mouse CD45.1 monoclonal antibody (clone: A20) FITC | eBioscience | Cat. # 11-0453-82 |
Anti human IRF4 monoclonal antibody (clone:REA201) PE-Vio770 | Miltenyi Biotec | Cat. # 130-100-909 |
Anti human CD134 (OX40) monoclonal antibody (clone: ACT35) PE | Miltenyi Biotec | Cat. # 130-116-488 |
Anti human CD25 monoclonal antibody (clone: REA570) APC-Vio770 | Miltenyi Biotec | Cat. # 130-123-469 |
Anti human CD137 monoclonal antibody (clone: 4B4-1) APC | BioLegend | Cat. # 309810 |
Anti human CD107a monoclonal antibody (clone: REA792) FITC | Miltenyi Biotec | Cat. # 130-111-620 |
Bacteria and virus strains | ||
WT MCMV (MW97.01) | In house produced | Wagner et al.,48 |
mCMV-N4 | In house produced | Lemmermann et al., 201028 |
mCMV-YLQPRTFLL | In house produced | N/A |
mCMV- GILGFVFTL | In house produced | N/A |
GS1783 bacteria | In house produced | Tischer et al., 201049 |
Biological samples | ||
PBMCs | Collected in this study | N/A |
Chemicals peptides and recombinant proteins | ||
Brefeldin A | eBioscience | Cat. # 00-4506-51 |
Histopaque 1077 | Sigma Aldrich | Cat. # 10771 |
Phorbol myristate acetate (PMA) | InvivoGen | Cat. # tlrl-pma |
Ionomycin | InvivoGen | Cat. # inh-ion |
YLQPRTFLL peptide | JPT Peptide Technologies | N/A |
GILGFVFTL peptide | JPT Peptide Technologies | N/A |
PepTivator Influenza A (H1N1) HA | Miltenyi Biotec | 130-099-803 |
PepTivator SARS-CoV-2 Prot_S | Miltenyi Biotec | 130-126-701 |
Critical commercial assays | ||
Intracellular Fixation & Permeabilization Buffer Set | eBioscience | Cat. # 88-8824-00 |
Super Bright Complete Staining Buffer | eBioscience | Cat. # SB-4401-75 |
Deposited data | ||
RNA sequencing data | GEO | GEO: GSE202262 |
Experimental Models: Organisms | ||
Mouse: NSG-HLA:A∗02 transgenic | The Jackson Laboratory | Strain code: 9617 |
Oligonucleotides | ||
ie2_FLU_fwd (BAC mutagenesis) CTT TCT CTT GAC CAG AGA CCT GGT GAC CGT CAG GAA GAA GAT TCA GCC TCT GAC TAA GGG GAT TTT AGG ATT TGT GTT CAC GCT CTG AGA GGA CAC GAG GAC GCA TCG TGG CCG GAT CTC | Metabion GmbH | N/A |
ie2_FLU_rev (BAC mutagenesis) CCT CTT TAT TTA TTG ATT AAA AAC CAT GAC ATA CCT CGT GTC CTC TCA GAG CGT GAA CAC AAA TCC TAA AAT CCC CTT AGT CAG AGG CTG AAT CTT CTT CCG TGA CCA CGT CGT GGA ATG C | Metabion GmbH | N/A |
ie2_COVID-19_fwd (BAC mutagenesis) CTT TCT CTT GAC CAG AGA CCT GGT GAC CGT CAG GAA GAA GAT TCA GTG CAG CTT ATT ATG TTA TCT TCA ACC TAG GAC TTT TCT ATT ATG AGA GGA CAC GAG GAC GCA TCG TGG CCG GAT CTC | Metabion GmbH | N/A |
CCT CTT TAT TTA TTG ATT AAA AAC CAT GAC ATA CCT CGT GTC CTC TCA TAA TAG AAA AGT CCT AGG TTG AAG ATA ACA TAA TAA GCT GCA CTG AAT CTT CTT CCG TGA CCA CGT CGT GGA ATG C | Metabion GmbH | N/A |
Recombinant DNA | ||
mCMV BAC plasmid pSM3fr | In house produced | Tischer et al., 201049 |
Software and algorithms | ||
Flow Jo | FLOWJO, LLC (Tree Star) | v10.8.1 |
GraphPad Prism | GraphPad Software | v8.3.0 |
Cytoscape | Cytoscape.org | v3.9.1 |
STRING | EMBL | V11.5 |