Table 3.
Repetitive DNA classification results for the manul cat (Otocolobus manul) genome assembly, OtoMan1.0, generated with RepeatMasker
| Element count | Total length (bp) | % of Genome covered | |
|---|---|---|---|
| Total bases masked | 863500886 | 34.72 | |
| Total interspersed elements | 737829702 | 29.66 | |
| Retroelements | 1596531 | 667340949 | 26.83 |
| SINE: | 470064 | 69243802 | 2.78 |
| MIR | 462472 | 68339639 | 2.75 |
| LINE: | 836683 | 488479415 | 19.64 |
| LINE1 | 468806 | 391204655 | 15.73 |
| LINE2 | 312177 | 84936852 | 3.41 |
| L3/CR1 | 41423 | 8915823 | 0.36 |
| RTE | 13010 | 3218808 | 0.13 |
| LTR: | 289784 | 109787884 | 4.41 |
| ERVL | 88371 | 39831330 | 1.60 |
| ERVL-MaLRs | 148224 | 51463432 | 2.07 |
| ERV_classI | 28861 | 12430326 | 0.50 |
| DNA elements: | 356331 | 69720741 | 2.80 |
| hAT-Charlie | 198573 | 36753878 | 1.48 |
| TcMar-Tigger | 55938 | 14630791 | 0.59 |
| Unclassified | 3794 | 597860 | 0.02 |
| Small RNA | 146099 | 11047204 | 0.44 |
| Simple repeats | 1677548 | 79649218 | 3.20 |
| Low complexity | 647428 | 34786006 | 1.40 |