Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2023 Apr 4;13:5516. doi: 10.1038/s41598-023-30667-z

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

PMC Copyright notice

Workflow of swab selection and whole genome recovery. (A) Shows how swabs were selected for influenza whole-genome sequencing (WGS). Patients diagnosed with either influenza subtypes A(H1N1)pdm09 or A(H3N2) and whose swab had a PCR CT ≤ 35 had their laboratory codes randomised based on the subtype and year of collection using the R software v3.6.3 (https://www.r-project.org). All available swabs were retrieved for years with less than fifteen swabs. The 697 swabs missing include some shipped to the Centers for Disease Control and Prevention (CDC) for routine surveillance and some lost due to an accidental failure of a freezer. The numbers are based on the UVRI-NIC laboratory dataset only, as of 9th May 2018. (B) Shows how viral samples were excluded before and after sequencing and the rate of whole genome recovery. Eight viruses [2 A(H1N1)pdm09 and 6 A(H3N2)] failed quality control (QC) before sequencing.