Table 1.
No. | BioProject | Sequencing region | Country and region | Sample size |
Total | HP status |
Sample type | SRA | HP conventional testing method |
||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Healthy | Gastritis | IM | GC | (+) | (-) | ||||||||
1 | PRJEB2110414 | V1-V2 | UK | 22 | 35 | 10 | 10 | 77 | 49 | 28 | Mucosa | ERP023334 | Histology and RUT and Serology |
2 | PRJEB2149716 | V4 | Singapore, Malaysia | 20 | 12 | 32 | 22 | 10 | Mucosa | ERP02375 | Serology | ||
3 | PRJEB2210715 | V1-V2 | Austria | 6 | 20 | 26 | 19 | 7 | Mucosa | ERP024440 | Histology and PCR | ||
4 | PRJEB2693117 | V4 | China | 56 | 41 | 54 | 84 | 235 | 79 | 156 | Mucosa | ERP108962 | 13C-UBT |
5 | PRJNA31012718 | V3-V4 | China, Shanxi | 157 | 157 | Mucosa | SRP080738 | ||||||
Mexico | 134 | 134 | |||||||||||
6 | PRJNA37577213 | V4 | China, Xi’an | 120 | 41 | 40 | 201 | 140 | 61 | Mucosa | SRP100168 | ||
China, Inner Mongolia | 107 | 36 | 143 | 101 | 42 | ||||||||
7 | PRJNA42888319 | V3-V4 | China, Zhejiang | 745 | 745 | Mucosa | SRP128749 | ||||||
8 | PRJNA48141321 | V4 | China, Nanchang | 115 | 91 | 114 | 320 | 142 | 178 | Mucosa | SRP154244 | Immunohistochemistry test | |
41 | 27 | 28 | 96 | 46 | 50 | Fluid | |||||||
9 | PRJNA49543620 | V3-V4 | China, Nanchang | 32 | 32 | 32 | Mucosa | SRP165213 | 13C-UBT |