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. 2023 Mar 28;34(4):754–762. doi: 10.1021/jasms.3c00022

Table 1. Benchmarking sHTPP with Previous High-Throughput Plasma/Serum Proteomics Studies (NS: Not specified).

  Laboratory setting
 Results
  LC Mass Spec Peptide Purification Retention Time MS mode Data Processing Tool Protein ID Quantified Protein (Completeness, %)
Bennike et al.15 Eksigent Q-Exactive Yes 60 min DIA Spectronaut 664 241 (100)
Han et al.18 Ultimate 3000 Q-Exactive plus Yes 90 min DIA Spectronaut 608 484 (50)
Johansson et al.17 Evosep timsTOF pro Yes 21 min DIA-PASEF Spectronaut 393 NS
Messner et al.13 Waters H-Class Triple TOF 6600 Yes 5 min DIA DIA-NN 311 182 (100)
Mc Ardle et al.19 Evosep OE480 Yes 21 min DIA OpenSWATH 471 117 (60)
Geyer et al.16 EASY-nLC 1000 Q-Exactive HF NS 20 min DDA MaxQuant 313 284 (100)
Mi et al.20 Evosep timsTOF pro No 11.5 min DDA-PASEF FragPipe 269 170 (60)
Woo et al. [this study] Evosep OE240 No 21 min DIA FragPipe/DIA-NN 615 512 (100)