Table 1. Summary of the whole mouse brain cell type atlas.
Major cell divisions (Pallium glutamatergic, Subpalium GABAergic, PAL-sAMY-TH-HY-BM-HB neuronal, CBX-MOB-other neuronal, Neuroglial, Vascular, Immune), cell classes under each division, and the numbers of subclasses, supertypes, and clusters under each class are listed. Each level of the hierarchy is color coded consistently with the taxonomy.
| Cell Class | No. of Subclasses | No. of Supertypes | No. of Clusters |
|---|---|---|---|
| Pallium glutamatergic | |||
| IT-ET Glut | 26 | 101 | 402 |
| NP-CT-L6b Glut | 8 | 27 | 83 |
| Subpallium GABAergic | |||
| CGE GABA | 4 | 19 | 101 |
| MGE GABA | 4 | 16 | 106 |
| CNU GABA | 13 | 50 | 212 |
| LSX GABA | 6 | 30 | 146 |
| PAL-sAMY-TH-HY-MB-HB neuronal | |||
| MH-LH Glut | 2 | 9 | 35 |
| TH Glut | 8 | 35 | 113 |
| CNU-HYa GABA | 18 | 83 | 379 |
| HY GABA | 18 | 72 | 425 |
| CNU-HYa Glut | 13 | 42 | 236 |
| HY Glut | 19 | 84 | 337 |
| HY MM Glut | 2 | 3 | 13 |
| MB Glut | 30 | 102 | 657 |
| P Glut | 11 | 38 | 235 |
| MY Glut | 22 | 59 | 411 |
| MB GABA | 26 | 87 | 472 |
| P GABA | 12 | 23 | 141 |
| MY GABA | 18 | 54 | 347 |
| MB Dopa | 1 | 8 | 43 |
| MB-HB Sero | 1 | 7 | 32 |
| CBX-MOB-other neuronal | |||
| CB GABA | 6 | 12 | 27 |
| CB Glut | 2 | 3 | 9 |
| HY Gnrh1 Glut | 1 | 1 | 1 |
| MOB-DG-IMN | 9 | 28 | 121 |
| MOB-CR Glut | 2 | 6 | 16 |
| Pineal Glut | 1 | 1 | 1 |
| Neuroglial | |||
| Astro-Epen | 10 | 22 | 41 |
| Oligo | 2 | 6 | 24 |
| OEG | 1 | 1 | 4 |
| Vascular | |||
| Vascular | 5 | 8 | 19 |
| Immune | |||
| Immune | 5 | 8 | 11 |