Bacterial and Virus Strains |
Escherichia coli DH5α |
Thermo Fisher |
Cat# 18265017 |
Escherichia coli BL21 (DE3) |
Thermo Fisher |
Cat# EC0114 |
Chemicals, Peptides, and Recombinant Proteins |
AlexaFluor488 (A488) NHS ester |
Thermo Fisher |
Cat# A20000 |
Cy3 maleimide mono-reactive dye |
GE Healthcare |
Cat# PA23031 |
Cy5 NHS ester mono-reactive dye |
GE Healthcare |
Cat# PA15101 |
RNaseOUT Recombinant ribonuclease inhibitor |
Thermo Fisher |
Cat# 10777019 |
Gibson Assembly Master mix |
New England Biolabs |
Cat# E2611S |
Klenow Fragment |
New England Biolabs |
Cat# M0212 |
Biotin-11-dUTP |
Thermo Fisher |
Cat# R0081 |
Biotin-14-dCTP |
Thermo Fisher |
Cat# 19518018 |
Biotin-14-dATP |
Thermo Fisher |
Cat# 19524016 |
Trolox |
Sigma-Aldrich |
Cat# 238813 |
4-Nitrobenzyl alcohol (NBA) |
Sigma-Aldrich |
Cat# N12821 |
Cyclooctatetraene (COT) |
Sigma-Aldrich |
Cat# 138924 |
Protocatechuate 3,4-Dioxygenase from Pseudomonas sp. (PCD) |
Sigma-Aldrich |
Cat# P8279 |
3,4-Dihydroxybenzoic acid (PCA) |
Sigma-Aldrich |
Cat# 37580 |
Streptavidin-coated polystyrene particles (2.0–2.9 μm) |
Spherotech |
Cat# SVP-20-5 |
Rifampicin |
Sigma-Aldrich |
Cat# R3501 |
S6-RNAP |
This paper |
N/A |
σ70
|
40
|
N/A |
Sfp synthase |
41
|
N/A |
Recombinant DNA |
pVS11-Sfp-rpoC (expressing S6-RNAP) |
This paper |
N/A |
pLW83 (Template1)
|
This paper |
N/A |
pLW86 (Template2)
|
This paper |
N/A |
pLW87 (Template3)
|
This paper |
N/A |
pLW88 (Template4)
|
This paper |
N/A |
pLW89 (Template5)
|
This paper |
N/A |
pLW103 (Template6)
|
This paper |
N/A |
Software and Algorithms |
Bluelake |
LUMICKS |
https://lumicks.github.io/bluelake-api/
|
Origin |
OriginLab |
https://www.originlab.com
|
Prism |
GraphPad |
https://www.graphpad.com/scientific-software/prism/
|
Python scripts for single-molecule data analysis |
This paper |
doi:10.5281/zenodo.7618698
|
Deposited data |
Unprocessed single-molecule images |
This paper |
doi:10.17632/djgmvpxjj9.1
|
Unprocessed gels |
This paper |
doi:10.17632/yp3x9k53gf.1
|