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. 2023 Apr 7;14:1947. doi: 10.1038/s41467-023-37684-6

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — a Methylation features depicted by using 20-Mb-wide bins across the 12 chromosomes. Units on the circumference show megabase values. Track a, repeat coverage. Track b, gene density. Track c, CG methylation level. Track d, CHG methylation level. Track e, CHH methylation level. Track f, 21-nt siRNA density. Track g, 22-nt siRNA density. Track h, 24-nt siRNA density. b DNA methylation levels of CG, CHG, and CHH for genes and TEs. c Percentages of mCG, mCHG and mCHH for genes and TEs. Value is calculated as the number of mC divided by the number of total C. d The densities of motifs and methylation levels of three sub-contexts across chromosomes were calculated per 20 Mb bin (bin number = 1227 for each sub-context). Horizontal lines, the lower and upper bounds of the boxes represent the medium values, the first and third quartiles, respectively; minima is the smallest data greater than or equal to the first quartile – 1.5 × interquartile range (IQR); maxima is the largest data point less than or equal quartile + 1.5 × IQR. e Densities of motifs and methylation levels of three sub-contexts across 12 chromosomes. Source data are provided as a Source Data file.