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. Author manuscript; available in PMC: 2023 Apr 8.
Published in final edited form as: Nat Genet. 2022 Jul 11;54(7):1013–1025. doi: 10.1038/s41588-022-01116-w

Figure 7. Allelic DeepLoop maps can detect and functionally characterize large heterozygous SVs.

Figure 7.

a, Scatterplot showing the ultra-specific loops (in red circles). b, Four large heterozygous SVs containing a majority of the ultra-specific loops. c, The raw contact heatmaps of the Inv-chr2 locus. The “corrected” raw heatmap of the inverted paternal allele is included (“fix inversion”). d, The genome browser track of the Inv-chr2 locus shows CTCF and H3K27ac binding and chromatin loops in the un-inverted maternal allele and the inverted paternal allele. e, Bar plots showing the allelic expression of the genes highlighted in d at the inversion boundaries.