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. 2023 Jan 6;33(3):319–328. doi: 10.4014/jmb.2212.12026

Fig. 2. Upregulation of ribosomal proteins in M. restricta upon co-culturing with Staphylococcus spp.

Fig. 2

A. Venn diagram showing the numbers of genes exhibiting more than 2-fold increase in M. restricta (M.R) upon co-culturing compared to axenic culture. Black arrows point to mitochondrial ribosomal protein-encoding genes (mito RPGs) and cytoplasmic/ nuclear ribosomal protein-encoding genes (cyt/nuc RPGs). B. Box plots showing the expressional changes in mito RPGs and in cyto/nuc RPGs in M. restricta co-cultured with S. epidermidis compared to M. restricta axenic culture (M.R+S.E/ M.R) and in M. restricta co-cultured with S. aureus compared to M. restricta axenic culture (M.R+S.A/ M.R). C. Motif sequences of identified mito and cyto/nuc RPGs analyzed by MEME Suite 5.5.0. D. Box plots showing the expressional changes in mito RPGs and cyto/nuc RPGs according to the presence of the motif sequence.