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. 2023 Apr 7;11:e14936. doi: 10.7717/peerj.14936

Table 4. Binding free energy (kcal/mol) calculation of mutant complexes C2, C3 and C5.

Interactions PGAM1- C2
R191A
PGAM1- C2
Y92A
PGAM1- C2
F22A
PGAM1- C3
R191A
PGAM1- C3
Y92A
PGAM1- C3
F22A
PGAM1- C5
R191A
PGAM1- C5
Y92A
PGAM1- C5
F22A
ΔGvdW −35.62 ± 0.27 −33.90 ± 0.23 −33.50 ± 0.24 −41.48 ± 0.18 −38.57 ± 0.17 −38.53 ± 0.17 −35.22 ± 0.33 −33.16 ± 0.30 −32.08 ± 0.28
ΔGele −11.10 ± 0.29 −19.35 ± 0.29 −19.11 ± 0.28 −8.63 ± 0.29 −19.58 ± 0.34 −20.77 ± 0.35 −4.13 ± 0.29 −12.60 ± 0.44 −14.51 ± 0.51
ΔGGB 20.83 ± 0.28 25.11 ± 0.30 24.63 ± 0.28 20.22 ± 0.20 27.04 ± 0.23 26.99 ± 0.24 13.04 ± 0.20 17.98 ± 0.29 19.41 ± 0.31
ΔGsurf −4.81 ± 0.02 −4.82 ± 0.02 −4.64 ± 0.02 −4.96 ± 0.01 −4.83 ± 0.01 −4.72 ± 0.01 −4.75 ± 0.04 −4.60 ± 0.03 −4.40 ± 0.04
ΔGgas −46.72 ± 0.28 −53.65 ± 0.31 −52.61 ± 0.31 −50.11 ± 0.34 −58.15 ± 0.35 −59.31 ± 0.34 −39.35 ± 0.53 −45.76 ± 0.67 −46.60 ± 0.71
ΔGsolv 16.01 ± 0.28 20.28 ± 0.30 19.98 ± 0.28 15.25 ± 0.20 22.21 ± 0.23 22.27 ± 0.24 8.28 ± 0.21 13.38 ± 0.27 15.00 ± 0.29
T ΔS −22.62 ± 0.84 −22.62 ± 0.84 −22.62 ± 0.84 −20.23 ± 1.26 −20.23 ± 1.26 −20.23 ± 1.26 −24.62 ± 1.15 −24.62 ± 1.15 −24.62 ± 1.15
W ΔGtotal −37.11 ± 0.36 −37.11 ± 0.36 −37.11 ± 0.36 −41.53 ± 0.39 −41.53 ± 0.39 −41.53 ± 0.39 −36.79 ± 0.62 −36.79 ± 0.62 −36.79 ± 0.62
M ΔGtotal −30.70 ± 0.29 −33.37 ± 0.34 −32.62 ± 0.34 −34.86 ± 0.25 −35.94 ± 0.41 −37.03 ± 0.40 −31.06 ± 0.56 −32.37 ± 0.55 −31.59 ± 0.57
ΔΔGbind −6.41 ± 2.52 −3.74 ± 1.40 −4.49 ± 1.08 −6.67 ± 4.26 −5.58 ± 1.49 −4.49 ± 1.44 −5.72 ± 2.90 −4.41 ± 2.58 −5.19 ± 1.72

Notes.

T ΔS
The entropy changes
W ΔGtotal
Binding free energy of Wild type complex
M ΔGtotal
Binding free energy of Mutant complex
ΔΔGbind
Difference in mutant and wild type energy values