Table 4. Binding free energy (kcal/mol) calculation of mutant complexes C2, C3 and C5.
Interactions |
PGAM1-
C2
R191A |
PGAM1-
C2
Y92A |
PGAM1-
C2
F22A |
PGAM1-
C3
R191A |
PGAM1-
C3
Y92A |
PGAM1-
C3
F22A |
PGAM1-
C5
R191A |
PGAM1-
C5
Y92A |
PGAM1-
C5
F22A |
---|---|---|---|---|---|---|---|---|---|
ΔGvdW | −35.62 ± 0.27 | −33.90 ± 0.23 | −33.50 ± 0.24 | −41.48 ± 0.18 | −38.57 ± 0.17 | −38.53 ± 0.17 | −35.22 ± 0.33 | −33.16 ± 0.30 | −32.08 ± 0.28 |
ΔGele | −11.10 ± 0.29 | −19.35 ± 0.29 | −19.11 ± 0.28 | −8.63 ± 0.29 | −19.58 ± 0.34 | −20.77 ± 0.35 | −4.13 ± 0.29 | −12.60 ± 0.44 | −14.51 ± 0.51 |
ΔGGB | 20.83 ± 0.28 | 25.11 ± 0.30 | 24.63 ± 0.28 | 20.22 ± 0.20 | 27.04 ± 0.23 | 26.99 ± 0.24 | 13.04 ± 0.20 | 17.98 ± 0.29 | 19.41 ± 0.31 |
ΔGsurf | −4.81 ± 0.02 | −4.82 ± 0.02 | −4.64 ± 0.02 | −4.96 ± 0.01 | −4.83 ± 0.01 | −4.72 ± 0.01 | −4.75 ± 0.04 | −4.60 ± 0.03 | −4.40 ± 0.04 |
ΔGgas | −46.72 ± 0.28 | −53.65 ± 0.31 | −52.61 ± 0.31 | −50.11 ± 0.34 | −58.15 ± 0.35 | −59.31 ± 0.34 | −39.35 ± 0.53 | −45.76 ± 0.67 | −46.60 ± 0.71 |
ΔGsolv | 16.01 ± 0.28 | 20.28 ± 0.30 | 19.98 ± 0.28 | 15.25 ± 0.20 | 22.21 ± 0.23 | 22.27 ± 0.24 | 8.28 ± 0.21 | 13.38 ± 0.27 | 15.00 ± 0.29 |
T ΔS | −22.62 ± 0.84 | −22.62 ± 0.84 | −22.62 ± 0.84 | −20.23 ± 1.26 | −20.23 ± 1.26 | −20.23 ± 1.26 | −24.62 ± 1.15 | −24.62 ± 1.15 | −24.62 ± 1.15 |
W ΔGtotal | −37.11 ± 0.36 | −37.11 ± 0.36 | −37.11 ± 0.36 | −41.53 ± 0.39 | −41.53 ± 0.39 | −41.53 ± 0.39 | −36.79 ± 0.62 | −36.79 ± 0.62 | −36.79 ± 0.62 |
M ΔGtotal | −30.70 ± 0.29 | −33.37 ± 0.34 | −32.62 ± 0.34 | −34.86 ± 0.25 | −35.94 ± 0.41 | −37.03 ± 0.40 | −31.06 ± 0.56 | −32.37 ± 0.55 | −31.59 ± 0.57 |
ΔΔGbind | −6.41 ± 2.52 | −3.74 ± 1.40 | −4.49 ± 1.08 | −6.67 ± 4.26 | −5.58 ± 1.49 | −4.49 ± 1.44 | −5.72 ± 2.90 | −4.41 ± 2.58 | −5.19 ± 1.72 |
Notes.
- T ΔS
- The entropy changes
- W ΔGtotal
- Binding free energy of Wild type complex
- M ΔGtotal
- Binding free energy of Mutant complex
- ΔΔGbind
- Difference in mutant and wild type energy values