Table 4.
Interspersed repeats in R. maxima.
| Name | Number | Length (bp) | Percent (%) |
|---|---|---|---|
| Retroelements | 12,207 | 8,108,723 | 3.94 |
| ȃPenelope class | 117 | 29,589 | 0.01 |
| ȃLINE class | 8858 | 5,531,322 | 2.68 |
| ȃL2/CR1/Rex | 5902 | 3,795,681 | 1.84 |
| ȃRTE/Bov-B | 2250 | 1,427,140 | 0.69 |
| ȃLTR class | 3349 | 2,577,401 | 1.25 |
| ȃBEL/Pao | 902 | 975,078 | 0.47 |
| ȃTy1/copia | 645 | 559,287 | 0.27 |
| ȃGypsy/DIRS1 | 1802 | 1,043,036 | 0.51 |
| DNA transposons | 12,991 | 5,092,926 | 2.47 |
| ȃhobo-Activator | 1428 | 588,862 | 0.29 |
| ȃTc1-IS630-Pogo | 8110 | 3,313,329 | 1.61 |
| ȃMULE-MuDR | 61 | 27,086 | 0.01 |
| ȃOther | 55 | 25,938 | 0.01 |
| Rolling circles | 283 | 137,313 | 0.07 |
| Unclassified | 82,923 | 17,722,456 | 8.6 |
| Total interspersed | 30,924,105 | 15.01 | |
| Small RNA | 453 | 142,243 | 0.07 |
| Simple repeats | 252,445 | 10,436,422 | 5.07 |
| Low complexity | 57,017 | 3,135,087 | 1.52 |
| Bases masked | 44,775,170 | 21.73 |