Antibodies |
rabbit anti-ARID1A |
Abcam |
Cat#: ab182560 |
rabbit anti-ARID1B |
Cell Signaling |
Cat#: 92964; RRID:AB_2800195 |
rabbit anti-BRG1 |
Cell Signaling |
Cat#: 49360; RRID:AB_2728743 |
rabbit anti-SNF5 |
Cell Signaling |
Cat#: 91735; RRID:AB_2800172 |
rabbit anti-HMGCS1 |
Proteintech |
Cat#: 17643–1-AP; RRID:AB_2248359 |
mouse anti-HMGCR |
Thermo Fisher |
Cat#: CL0259; RRID:AB_2786972 |
rabbit anti-MVD |
Proteintech |
Cat#: 15331–1-AP; RRID:AB_2147439 |
mouse anti-FDPS |
Proteintech |
Cat#: 16129–1-AP; RRID:AB_2104749 |
rabbit anti-SREBP2 |
Proteintech |
Cat#: 28212–1-AP; RRID:AB_2881091 |
rabbit anti-HMGB1 |
Abcam |
Cat#: ab18256; RRID:AB_444360 |
rabbit anti-cleaved IL-1β |
Cell Signaling |
Cat#: 83186; RRID:AB_2800010 |
rabbit anti-GSDMD |
Abcam |
Cat#: ab210070; RRID:AB_2893325 |
rabbit anti-caspase1 |
Cell Signaling |
Cat#: 3866; RRID:AB_2069051 |
rabbit anti-cleaved caspase1 |
Biovision |
Cat#: A1004 |
mouse anti-Histone H3 |
Cell Signaling |
Cat#: 14269; RRID:AB_2756816 |
rabbit anti-α-tubulin |
Cell Signaling |
Cat#: 2125; RRID:AB_2619646 |
mouse anti-β-actin |
Sigma-Aldrich |
Cat#: A5316; RRID:AB_476743 |
rabbit anti-SNF5 |
Bethyl |
Cat#: A301–087A; RRID:AB_2191714 |
mouse anti-Pol II |
Santa Cruz |
Cat#: sc-47701; RRID:AB_677353 |
anti-mouse IgG, HRP-linked antibody |
Cell Signaling |
Cat#: 7076; RRID:AB_330924 |
anti-rabbit IgG, HRP-linked antibody |
Cell Signaling |
Cat#: 7074; RRID:AB_2099233 |
mouse anti-cGAS |
Santa Cruz |
Cat#: sc-515777; RRID:AB_2734736 |
rabbit anti-γH2AX |
Cell Signaling |
Cat#: 9718; RRID:AB_2118009 |
rabbit anti-cleaved PARP p85 |
Cell Signaling |
Cat#: 5625; RRID:AB_10699459 |
mouse anti-RAC1 |
Proteintech |
Cat#: 66122–1-Ig; RRID:AB_2883264 |
rabbit anti-RHOA |
Proteintech |
Cat#: 10749–1-AP; RRID:AB_2285104 |
rabbit anti-HNF1β |
Sigma-Aldrich |
Cat#: HPA002083; RRID:AB_1080232 |
rabbit anti-cleaved Caspase 3 |
Cell Signaling |
Cat#: 9661L; RRID:AB_2341188 |
rabbit anti-Histone H3K4me3 |
Active Motif |
Cat#: 39159; RRID:AB_2615077 |
rabbit anti-Histone H3K27ac |
Abcam |
Cat#: ab4729; RRID:AB_2118291 |
IgG isotype control |
Bio X Cell, |
Cat#: BE0090; RRID:AB_1107780 |
mouse PD-L1 antibody for in vivo
|
Bio X Cell |
Cat#: BE0101; RRID:AB_10949073 |
human PD-L1 antibody for in vivo
|
R&D Systems |
Cat#: MAB10348 |
Fc blocking anti-mouse CD16/CD32 |
BD Bioscience |
Cat#: 553142; RRID:AB_394657 |
PE-Cy7 anti-mouse CD3e |
BD Bioscience |
Cat#: 552774; RRID:AB_394460 |
BV711 anti-mouse CD45 |
Biolegend |
Cat#: 103147; RRID:AB_2564283 |
PE/Cyanine7 anti-mouse PD-1 |
Biolegend |
Cat#: 109109; RRID:AB_572016 |
BV421 anti-mouse LAG-3 |
Biolegend |
Cat#: 125221; RRID:AB_2572080 |
Alexa Fluor 700 rat anti-mouse CD45 |
BD Biosciences |
Cat#: 560510; RRID:AB_1645208 |
BB515 mouse anti-human CD45 |
BD Biosciences |
Cat#: 564586; RRID:AB_2869588 |
BUV805 mouse anti-human CD3 |
BD Biosciences |
Cat#: 612895; RRID:AB_2870183 |
BUV395 mouse anti-human CD4 |
BD Biosciences |
Cat#: 563550; RRID:AB_2738273 |
PerCP-Cy5.5 mouse anti-human CD8 |
BD Biosciences |
Cat#: 565310; RRID:AB_2687497 |
BV786 mouse anti-human PD-1 |
BD Biosciences |
Cat#: 563789; RRID:AB_2738425 |
BV421 mouse anti-human LAG-3 |
BD Biosciences |
Cat#: 565720; RRID:AB_2744330 |
PerCP/Cyanine5.5 anti-mouse CD19 |
Biolegend |
Cat#: 115534; RRID:AB_2072925 |
APC/Fire750 anti-mouse CD8b.2 |
Biolegend |
Cat#: 140420; RRID:AB_2819885 |
Alexa Fluor 647 anti-mouse Ki67 |
Biolegend |
Cat#: 652408; RRID:AB_2562139 |
APC anti-mouse Arg1 |
eBioscience |
Cat#: 17369780; RRID:AB_2734834 |
APC-Cyanine7 anti-mouse CD64 |
Biolegend |
Cat#: 139334; RRID:AB_2910296 |
FITC anti-mouse Lyve1 |
eBioscience |
Cat#: 53-0443-82; RRID:AB_1633415 |
BUV805 anti-mouse CD11b |
BD Biosciences |
Cat#: 741934; RRID:AB_2871246 |
BV421 anti-mouse NK1.1 |
Biolegend |
Cat#: 108732; RRID:AB_2562218 |
BV711 anti-mouse Ly6G |
Biolegend |
Cat#: 127643; RRID:AB_2565971 |
BV785 anti-mouse Ly6C |
Biolegend |
Cat#: 128041; RRID:AB_2565852 |
PE anti-mouse CD163 |
Biolegend |
Cat#: 156704; RRID:AB_2860724 |
PE-Dazzle594 anti-mouse CD169 |
Biolegend |
Cat#: 142424; RRID:AB_2750059 |
PE-Cyanine7 anti-mouse F4/80 |
Biolegend |
Cat#: 123114; RRID:AB_893478 |
Bacterial and virus strains |
DH5α competent E. coli |
Thermo Fisher |
Cat#: 18265017 |
Stellar competent E. coli |
Fisher |
Cat#: DAL1100 |
Chemicals, peptides, and recombinant proteins |
simvastatin |
Sigma-Aldrich |
Cat#: S6196 |
atorvastatin |
Sigma-Aldrich |
Cat#: PHR1422 |
etoposide |
Sigma-Aldrich |
Cat#: E1383 |
methyl-β-cyclodextrin |
Cayman Chemical |
Cat#: 21633 |
Nigericin |
InvivoGen |
Cat#: tlrl-nig |
mevalonate |
Sigma-Aldrich |
Cat#: 43987 |
GGPP |
Sigma-Aldrich |
Cat#: G6025 |
cholesterol |
Sigma-Aldrich |
Cat#: C4951 |
lipofectamine 2000 |
Thermo Fisher |
Cat#: 11668027 |
AlamarBlue reagent |
Fisher |
Cat#: DAL1100 |
chemiluminescent substrate |
Thermo Fisher |
Cat#: 34094 |
protease inhibitors cocktail |
Roche |
Cat#: 11836170001 |
micrococcal nuclease |
Cell Signaling |
Cat#: 10010 |
Trizol reagent |
Thermo Fisher |
Cat#: 15596026 |
prolong antifade reagent |
Thermo Fisher |
Cat#: P36961
|
RedDot nuclear stain |
Biotium |
Cat#: 40061 |
Filipin III |
Sigma-Aldrich |
Cat#: F4767 |
mammalian protein extraction reagent |
Thermo Fisher |
Cat#: 78501 |
Cre recombinase expressing-adenovirus |
Vector Viral Core |
Cat#: VVC-U of Iowa-5 |
red blood cell lysis buffer |
Thermo Fisher |
Cat#: 00-4333-57 |
Fixable Viability Stain 510 |
BD Biosciences |
Cat#: 564406; RRID:AB_2869572 |
Mayer’s Hematoxylin |
Dako |
Cat#: S3309 |
Critical commercial assays |
LookOut Mycoplasma PCR detection |
Sigma-Aldrich |
Cat#: MP0035 |
ChIP DNA clean and concentrator kit |
Zymo Research |
Cat#: D5205 |
Reverse Transcription kit |
Thermo Fisher |
Cat#: 4368813 |
Cholesterol Assay Kit |
Abcam |
Cat#: ab133116 |
Amplex Red Cholesterol Quantitation Kit |
Thermo Fisher |
Cat#: A12216 |
2’3’-cGAMP ELISA Kit |
Cayman Chemical |
Cat#: 501700 |
FAM FLICA Caspase1 Kit |
Bio-Rad |
Cat#: ICT097 |
Mouse Dissociation Kit |
MiltenyiBiotec |
Cat#: 130-096-730 |
Viability staining Kit |
Thermo Fisher |
Cat#: L35957
|
Dako EnVision+ system |
Dako |
Cat#: K4011 |
HMG-CoA Reductase Assay Kit |
Sigma-Aldrich |
Cat#: CS1090 |
Annexin V Conjugates for Apoptosis Detection |
Thermo Fisher |
Cat#: A35110 |
Human IL-1β ELISA Kit |
Abcam |
Cat#: ab214025 |
Human IL-18 ELISA Kit |
Abcam |
Cat#: ab215539 |
True-Nuclea Transcription Factor Buffer Set |
Biolegend |
Cat#: 424401 |
Experimental models: Cell lines |
OVCA429 |
Dr. Ie-Ming Shih, Johns Hopkins University |
RRID:CVCL_3936 |
RMG1 |
JCRB |
Cat# JCRB0172; RRID:CVCL_1662 |
ES2 |
ATCC |
Cat#: CRL-1978; RRID: CVCL_3509 |
SKOV3 |
JCRB |
Cat# NIHS0737; RRID:CVCL_4Y20 |
OVISE |
JCRB |
Cat#: JCRB1043; RRID:CVCL_3116 |
OVTOKO |
JCRB |
Cat#: NIHS0301; RRID:CVCL_3117 |
TOV21G |
ATCC |
Cat#: CRL-11730; RRID:CVCL_3613 |
HEK-293T |
ATCC |
Cat#: CRL-3216; RRID: CVCL_0063 |
XVOA295 |
PMID: 28737768 |
N/A |
G401 |
PMID: 34085048 |
N/A |
12Z |
Dr. Ie-Ming Shih, Johns Hopkins University |
RRID:CVCL_0Q73 |
Experimental models: Organisms/strains |
NSG mice |
The Jackson Laboratory |
Strain#: 005557; RRID:IMSR_JAX:005557 |
Arid1a−/−;Pik3caH1047R transgenic mice |
PMID: 28737768 |
N/A |
Oligonucleotides |
Primers used in this study are listed in Table S2
|
This paper |
N/A |
Recombinant DNA |
pSpCas9(BB)-2A-GFP |
Addgene |
Cat#: 48138; RRID:Addgene_48138 |
pFETCh_Donor |
Addgene |
Cat#: 63934; RRID:Addgene_63934 |
pRP_ASC-LmCerulean |
Addgene |
Cat#: 41840; RRID:Addgene_41840 |
plentiCRISPR v2 |
Addgene |
Cat#: 52961; RRID:Addgene_52961 |
PlentiCRISPR-ARID1A
|
PMID: 30297712 |
N/A |
pLVX-M-puro |
Addgene |
Cat#: 125839; RRID:Addgene_125839 |
pLVX-SNF5-puro |
PMID: 34085048 |
N/A |
pCRISPR-Cre stuffer v4 |
Addgene |
Cat#: 158033; RRID:Addgene_158033 |
pMD2.G |
Addgene |
Cat#: 12259; RRID:Addgene_12259 |
psPAX2 |
Addgene |
Cat#: 12260; RRID:Addgene_12260 |
pLKO.1-HMGCS1-shRNA1 |
Molecular Screening Facility (Wistar) |
TRCN0000045843 |
pLKO.1-HMGCS1-shRNA2 |
Molecular Screening Facility (Wistar) |
TRCN0000045845 |
pLKO.1-ARID1B-shRNA1 |
Molecular Screening Facility (Wistar) |
TRCN0000107361 |
pLKO.1-ARID1B-shRNA2 |
Molecular Screening Facility (Wistar) |
TRCN0000107364 |
pLKO.1-BRG1-shRNA1 |
Molecular Screening Facility (Wistar) |
TRCN0000015549 |
pLKO.1- BRG1-shRNA2 |
Molecular Screening Facility (Wistar) |
TRCN0000015552 |
pLKO.1-SNF5-shRNA1 |
Molecular Screening Facility (Wistar) |
TRCN0000039585 |
pLKO.1-SNF5-shRNA2 |
Molecular Screening Facility (Wistar) |
TRCN0000039587 |
pLKO.1-Caspase1-shRNA1 |
Molecular Screening Facility (Wistar) |
TRCN0000003502 |
pLKO.1-Caspase1-shRNA2 |
Molecular Screening Facility (Wistar) |
TRCN0000003503 |
pLKO.1-GSDMD-shRNA1 |
Molecular Screening Facility (Wistar) |
TRCN0000179394 |
pLKO.1-GSDMD-shRNA2 |
Molecular Screening Facility (Wistar) |
TRCN0000180013 |
Software and algorithms |
GraphPad Prism version 8.0 |
GraphPad Software Inc. |
https://www.graphpad.com/
|
FlowJo version 10.0 |
FlowJo LLC |
https://www.flowio.com/
|
TraceFinder 4.1 |
Thermo Fisher |
https://www.thermofisher.com/order/catalog/product/OPTON-31001
|
ImageJ version 1.53a |
NIH |
https://imagei.nih.gov/ii/
|
GSEA version 4.1 |
PMID: 16199517 |
http://www.gsea-msigdb.org/gsea/index.isp
|