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. Author manuscript; available in PMC: 2024 Apr 10.
Published in final edited form as: Cancer Cell. 2023 Mar 23;41(4):740–756.e10. doi: 10.1016/j.ccell.2023.03.002

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
rabbit anti-ARID1A Abcam Cat#: ab182560
rabbit anti-ARID1B Cell Signaling Cat#: 92964; RRID:AB_2800195
rabbit anti-BRG1 Cell Signaling Cat#: 49360; RRID:AB_2728743
rabbit anti-SNF5 Cell Signaling Cat#: 91735; RRID:AB_2800172
rabbit anti-HMGCS1 Proteintech Cat#: 17643–1-AP; RRID:AB_2248359
mouse anti-HMGCR Thermo Fisher Cat#: CL0259; RRID:AB_2786972
rabbit anti-MVD Proteintech Cat#: 15331–1-AP; RRID:AB_2147439
mouse anti-FDPS Proteintech Cat#: 16129–1-AP; RRID:AB_2104749
rabbit anti-SREBP2 Proteintech Cat#: 28212–1-AP; RRID:AB_2881091
rabbit anti-HMGB1 Abcam Cat#: ab18256; RRID:AB_444360
rabbit anti-cleaved IL-1β Cell Signaling Cat#: 83186; RRID:AB_2800010
rabbit anti-GSDMD Abcam Cat#: ab210070; RRID:AB_2893325
rabbit anti-caspase1 Cell Signaling Cat#: 3866; RRID:AB_2069051
rabbit anti-cleaved caspase1 Biovision Cat#: A1004
mouse anti-Histone H3 Cell Signaling Cat#: 14269; RRID:AB_2756816
rabbit anti-α-tubulin Cell Signaling Cat#: 2125; RRID:AB_2619646
mouse anti-β-actin Sigma-Aldrich Cat#: A5316; RRID:AB_476743
rabbit anti-SNF5 Bethyl Cat#: A301–087A; RRID:AB_2191714
mouse anti-Pol II Santa Cruz Cat#: sc-47701; RRID:AB_677353
anti-mouse IgG, HRP-linked antibody Cell Signaling Cat#: 7076; RRID:AB_330924
anti-rabbit IgG, HRP-linked antibody Cell Signaling Cat#: 7074; RRID:AB_2099233
mouse anti-cGAS Santa Cruz Cat#: sc-515777; RRID:AB_2734736
rabbit anti-γH2AX Cell Signaling Cat#: 9718; RRID:AB_2118009
rabbit anti-cleaved PARP p85 Cell Signaling Cat#: 5625; RRID:AB_10699459
mouse anti-RAC1 Proteintech Cat#: 66122–1-Ig; RRID:AB_2883264
rabbit anti-RHOA Proteintech Cat#: 10749–1-AP; RRID:AB_2285104
rabbit anti-HNF1β Sigma-Aldrich Cat#: HPA002083; RRID:AB_1080232
rabbit anti-cleaved Caspase 3 Cell Signaling Cat#: 9661L; RRID:AB_2341188
rabbit anti-Histone H3K4me3 Active Motif Cat#: 39159; RRID:AB_2615077
rabbit anti-Histone H3K27ac Abcam Cat#: ab4729; RRID:AB_2118291
IgG isotype control Bio X Cell, Cat#: BE0090; RRID:AB_1107780
mouse PD-L1 antibody for in vivo Bio X Cell Cat#: BE0101; RRID:AB_10949073
human PD-L1 antibody for in vivo R&D Systems Cat#: MAB10348
Fc blocking anti-mouse CD16/CD32 BD Bioscience Cat#: 553142; RRID:AB_394657
PE-Cy7 anti-mouse CD3e BD Bioscience Cat#: 552774; RRID:AB_394460
BV711 anti-mouse CD45 Biolegend Cat#: 103147; RRID:AB_2564283
PE/Cyanine7 anti-mouse PD-1 Biolegend Cat#: 109109; RRID:AB_572016
BV421 anti-mouse LAG-3 Biolegend Cat#: 125221; RRID:AB_2572080
Alexa Fluor 700 rat anti-mouse CD45 BD Biosciences Cat#: 560510; RRID:AB_1645208
BB515 mouse anti-human CD45 BD Biosciences Cat#: 564586; RRID:AB_2869588
BUV805 mouse anti-human CD3 BD Biosciences Cat#: 612895; RRID:AB_2870183
BUV395 mouse anti-human CD4 BD Biosciences Cat#: 563550; RRID:AB_2738273
PerCP-Cy5.5 mouse anti-human CD8 BD Biosciences Cat#: 565310; RRID:AB_2687497
BV786 mouse anti-human PD-1 BD Biosciences Cat#: 563789; RRID:AB_2738425
BV421 mouse anti-human LAG-3 BD Biosciences Cat#: 565720; RRID:AB_2744330
PerCP/Cyanine5.5 anti-mouse CD19 Biolegend Cat#: 115534; RRID:AB_2072925
APC/Fire750 anti-mouse CD8b.2 Biolegend Cat#: 140420; RRID:AB_2819885
Alexa Fluor 647 anti-mouse Ki67 Biolegend Cat#: 652408; RRID:AB_2562139
APC anti-mouse Arg1 eBioscience Cat#: 17369780; RRID:AB_2734834
APC-Cyanine7 anti-mouse CD64 Biolegend Cat#: 139334; RRID:AB_2910296
FITC anti-mouse Lyve1 eBioscience Cat#: 53-0443-82; RRID:AB_1633415
BUV805 anti-mouse CD11b BD Biosciences Cat#: 741934; RRID:AB_2871246
BV421 anti-mouse NK1.1 Biolegend Cat#: 108732; RRID:AB_2562218
BV711 anti-mouse Ly6G Biolegend Cat#: 127643; RRID:AB_2565971
BV785 anti-mouse Ly6C Biolegend Cat#: 128041; RRID:AB_2565852
PE anti-mouse CD163 Biolegend Cat#: 156704; RRID:AB_2860724
PE-Dazzle594 anti-mouse CD169 Biolegend Cat#: 142424; RRID:AB_2750059
PE-Cyanine7 anti-mouse F4/80 Biolegend Cat#: 123114; RRID:AB_893478
Bacterial and virus strains
DH5α competent E. coli Thermo Fisher Cat#: 18265017
Stellar competent E. coli Fisher Cat#: DAL1100
Chemicals, peptides, and recombinant proteins
simvastatin Sigma-Aldrich Cat#: S6196
atorvastatin Sigma-Aldrich Cat#: PHR1422
etoposide Sigma-Aldrich Cat#: E1383
methyl-β-cyclodextrin Cayman Chemical Cat#: 21633
Nigericin InvivoGen Cat#: tlrl-nig
mevalonate Sigma-Aldrich Cat#: 43987
GGPP Sigma-Aldrich Cat#: G6025
cholesterol Sigma-Aldrich Cat#: C4951
lipofectamine 2000 Thermo Fisher Cat#: 11668027
AlamarBlue reagent Fisher Cat#: DAL1100
chemiluminescent substrate Thermo Fisher Cat#: 34094
protease inhibitors cocktail Roche Cat#: 11836170001
micrococcal nuclease Cell Signaling Cat#: 10010
Trizol reagent Thermo Fisher Cat#: 15596026
prolong antifade reagent Thermo Fisher Cat#: P36961
RedDot nuclear stain Biotium Cat#: 40061
Filipin III Sigma-Aldrich Cat#: F4767
mammalian protein extraction reagent Thermo Fisher Cat#: 78501
Cre recombinase expressing-adenovirus Vector Viral Core Cat#: VVC-U of Iowa-5
red blood cell lysis buffer Thermo Fisher Cat#: 00-4333-57
Fixable Viability Stain 510 BD Biosciences Cat#: 564406; RRID:AB_2869572
Mayer’s Hematoxylin Dako Cat#: S3309
Critical commercial assays
LookOut Mycoplasma PCR detection Sigma-Aldrich Cat#: MP0035
ChIP DNA clean and concentrator kit Zymo Research Cat#: D5205
Reverse Transcription kit Thermo Fisher Cat#: 4368813
Cholesterol Assay Kit Abcam Cat#: ab133116
Amplex Red Cholesterol Quantitation Kit Thermo Fisher Cat#: A12216
2’3’-cGAMP ELISA Kit Cayman Chemical Cat#: 501700
FAM FLICA Caspase1 Kit Bio-Rad Cat#: ICT097
Mouse Dissociation Kit MiltenyiBiotec Cat#: 130-096-730
Viability staining Kit Thermo Fisher Cat#: L35957
Dako EnVision+ system Dako Cat#: K4011
HMG-CoA Reductase Assay Kit Sigma-Aldrich Cat#: CS1090
Annexin V Conjugates for Apoptosis Detection Thermo Fisher Cat#: A35110
Human IL-1β ELISA Kit Abcam Cat#: ab214025
Human IL-18 ELISA Kit Abcam Cat#: ab215539
True-Nuclea Transcription Factor Buffer Set Biolegend Cat#: 424401
Experimental models: Cell lines
OVCA429 Dr. Ie-Ming Shih, Johns Hopkins University RRID:CVCL_3936
RMG1 JCRB Cat# JCRB0172; RRID:CVCL_1662
ES2 ATCC Cat#: CRL-1978; RRID: CVCL_3509
SKOV3 JCRB Cat# NIHS0737; RRID:CVCL_4Y20
OVISE JCRB Cat#: JCRB1043; RRID:CVCL_3116
OVTOKO JCRB Cat#: NIHS0301; RRID:CVCL_3117
TOV21G ATCC Cat#: CRL-11730; RRID:CVCL_3613
HEK-293T ATCC Cat#: CRL-3216; RRID: CVCL_0063
XVOA295 PMID: 28737768 N/A
G401 PMID: 34085048 N/A
12Z Dr. Ie-Ming Shih, Johns Hopkins University RRID:CVCL_0Q73
Experimental models: Organisms/strains
NSG mice The Jackson Laboratory Strain#: 005557; RRID:IMSR_JAX:005557
Arid1a−/−;Pik3caH1047R transgenic mice PMID: 28737768 N/A
Oligonucleotides
Primers used in this study are listed in Table S2 This paper N/A
Recombinant DNA
pSpCas9(BB)-2A-GFP Addgene Cat#: 48138; RRID:Addgene_48138
pFETCh_Donor Addgene Cat#: 63934; RRID:Addgene_63934
pRP_ASC-LmCerulean Addgene Cat#: 41840; RRID:Addgene_41840
plentiCRISPR v2 Addgene Cat#: 52961; RRID:Addgene_52961
PlentiCRISPR-ARID1A PMID: 30297712 N/A
pLVX-M-puro Addgene Cat#: 125839; RRID:Addgene_125839
pLVX-SNF5-puro PMID: 34085048 N/A
pCRISPR-Cre stuffer v4 Addgene Cat#: 158033; RRID:Addgene_158033
pMD2.G Addgene Cat#: 12259; RRID:Addgene_12259
psPAX2 Addgene Cat#: 12260; RRID:Addgene_12260
pLKO.1-HMGCS1-shRNA1 Molecular Screening Facility (Wistar) TRCN0000045843
pLKO.1-HMGCS1-shRNA2 Molecular Screening Facility (Wistar) TRCN0000045845
pLKO.1-ARID1B-shRNA1 Molecular Screening Facility (Wistar) TRCN0000107361
pLKO.1-ARID1B-shRNA2 Molecular Screening Facility (Wistar) TRCN0000107364
pLKO.1-BRG1-shRNA1 Molecular Screening Facility (Wistar) TRCN0000015549
pLKO.1- BRG1-shRNA2 Molecular Screening Facility (Wistar) TRCN0000015552
pLKO.1-SNF5-shRNA1 Molecular Screening Facility (Wistar) TRCN0000039585
pLKO.1-SNF5-shRNA2 Molecular Screening Facility (Wistar) TRCN0000039587
pLKO.1-Caspase1-shRNA1 Molecular Screening Facility (Wistar) TRCN0000003502
pLKO.1-Caspase1-shRNA2 Molecular Screening Facility (Wistar) TRCN0000003503
pLKO.1-GSDMD-shRNA1 Molecular Screening Facility (Wistar) TRCN0000179394
pLKO.1-GSDMD-shRNA2 Molecular Screening Facility (Wistar) TRCN0000180013
Software and algorithms
GraphPad Prism version 8.0 GraphPad Software Inc. https://www.graphpad.com/
FlowJo version 10.0 FlowJo LLC https://www.flowio.com/
TraceFinder 4.1 Thermo Fisher https://www.thermofisher.com/order/catalog/product/OPTON-31001
ImageJ version 1.53a NIH https://imagei.nih.gov/ii/
GSEA version 4.1 PMID: 16199517 http://www.gsea-msigdb.org/gsea/index.isp