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Analysis of iPSC differentiation into embryonic germ layers
(A) UMAP clearly separates clusters by differentiation stage.
(B) Clustree flowchart identifies how cells sort into clusters at various resolutions.
(C) Silhouette plot cleanly separates clusters at 0.1 resolution.
(D) Interactive heatmap with a custom set of lineage-specific genes.
(E) Total up- and downregulated DE genes by differentiation stage compared with the rest of the clusters.
