Table 2.
Genetic marker | Primer used | Type of PCRa | Sample type | Sensitivity (%) | Specificity (%) | Reference method | References |
---|---|---|---|---|---|---|---|
18S | [34] | RT-PCR | Fecal | 72 to 92 | 100 | Parasitological | [34]b |
84.7 | 95.8 | Parasitological | [83] | ||||
76.8 | 89.7 | Parasitological | [84] | ||||
15 to 34.1 | > 99 | Parasitological | [87] | ||||
93.8 | 86.5 | Parasitological | [35] | ||||
90 | 85.7 | Parasitological | [36] | ||||
27.5 to 86.3 | NA | Parasitological | [45] | ||||
73.9 | 100 | Parasitological | [39] | ||||
85 | 87.3 | Parasitological | [25] | ||||
38 | 100 | Immunological | [85] | ||||
63 | NA | Immunological | [20] | ||||
57 | NA | Parasitological and immunological (composite reference) | [16] | ||||
Multiplex RT-PCR | Fecal | 17.4 to 76.3 | 93.9 | Parasitological and molecular combination | [15] | ||
88.9 | 92.7 | Parasitological | [86] | ||||
cPCR | Fecal | 100 | NA | Parasitological | [21] | ||
76.7 | 84.3 | Parasitological | [25] | ||||
78.8 to 84.8 | 82.5 to 95 | Parasitological | [87] | ||||
100 | NA | Parasitological | [88] | ||||
[89] | cPCR | Fecal | 100 | NA | Parasitological | [89]b | |
Nested PCR | Fecal | 75 | NA | Parasitological | [89]b | ||
[37] | Multiplex RT-PCR | Fecal | 72 to 100 | 100 | Parasitological | [37]b | |
[38] | RT-PCR | Fecal | 82 | 76.7 | Parasitological | [38]b | |
ddPCR | Fecal | 98 | 90 | Parasitological | [38]b | ||
COI | [90] | Nested PCR | Fecal | 100 | 91.6 | Parasitological | [90]b |
ITS2 | [89] | cPCR | Fecal | 61 | NA | Parasitological | [91] |
[92] | cPCR | Fecal | 100 | NA | Parasitological | [92]b | |
Repetitive elements | [46] | cPCR | Urine | 93.6 | NA | Parasitological | [46]b |
17 | NA | Immunological | [20] | ||||
74.7 | 77.1 | Bayesian estimates | [79] |
aRT-PCR real-time PCR, cPCR conventional PCR, ddPCR droplet digital PCR
bThe reference indicates that the primers were originally developed in that particular study