Table 3.
Frequency of the alternative allele in the investigated variants for morphological, reproductive and adaptive (i.e. response to disease) traits in Colombian Creole, Iberian trunk and cosmopolitan pig breeds
| Variant2 | Alternative allele |
Breed1 | |||||
|---|---|---|---|---|---|---|---|
| Colombian Creole | |||||||
| CM n = 7 |
SP n = 7 |
ZU n = 7 |
CR n = 21 |
IT n = 108 |
CP n = 215 |
||
| ACTN1_1 | T | 0.29 | 0.79 | 0.33 | 0.47 | 0.58 | 0.41 |
| ADIPOQ_1 | A | 0.21 | 0.57 | 0.21 | 0.33 | 0.03 | 0.13 |
| AHR_1 | T | 0.75 | 1.00 | 0.79 | 0.85 | 0.94 | 0.33 |
| AHR_2 | C | 0.71 | 1.00 | 0.86 | 0.86 | 1.00 | 0.36 |
| AHR_3 | C | 0.79 | 1.00 | 0.86 | 0.88 | 1.00 | 0.32 |
| FUT1_1 | C | 0.50 | 0.36 | 0.93 | 0.60 | 0.94 | 0.75 |
| GBP5_1 | T | 0.07 | 0.36 | 0.64 | 0.36 | 0.00 | 0.19 |
| HSP70_1 | A | 0.43 | 0.21 | 0.00 | 0.21 | 0.60 | 0.38 |
| HSP70_2 | C | 0.00 | 0.50 | 0.50 | 0.33 | 0.75 | 0.63 |
| HSP70_3 | A | 0.00 | 0.00 | 0.00 | 0.00 | 0.17 | 0.01 |
| HSP70_4 | C | 1.00 | 1.00 | 0.50 | 0.83 | 0.88 | 0.76 |
| KIT_1 | T | 0.07 | 0.00 | 0.00 | 0.02 | 0.00 | 0.00 |
| MC1R_1 | T | 0.00 | 0.14 | 0.29 | 0.14 | 0.01 | 0.00 |
| MC1R_2 | C | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.67 |
| MC1R_3 | G | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 0.67 |
| MC1R_4 | T | 1.00 | 0.86 | 0.79 | 0.88 | 0.76 | 0.67 |
| MC1R_5 | G | 0.00 | 0.14 | 0.21 | 0.12 | 0.01 | 0.00 |
| MUC4_1 | G | 0.00 | 0.00 | 0.07 | 0.02 | 0.03 | 0.29 |
| NR6A1_1 | G | 0.07 | 0.00 | 0.00 | 0.02 | 0.14 | 0.00 |
| PPARD_1 | A | 0.00 | 0.00 | 0.50 | 0.17 | 0.02 | 0.01 |
| TAS2R39_1 | G | 1.00 | 1.00 | 1.00 | 1.00 | 0.96 | 0.79 |
Bold type indicates allele fixation. 1Colombian Creole breeds (CM, Casco de Mula; SP, San Pedreño; ZU, Zungo; CR, all three Colombian Creole breeds); IT, Iberian trunk pigs (60 Iberian and 48 Alentejano); and CP, cosmopolitan breeds (9 Pietrain; 158 Duroc; and 48 Landrace × Large White). 2See Table 1 for variant description