Model predictions of Arf1 activation dynamics (J) and Gαi activation dynamics (K) when negative feedback do not exist. The depletion of negative feedback in the model is achieved by deleting either
or
(interrupted green line). These two depletion ways have no difference due to AND gate logic; please see also Fig
EV3 for model predictions using OR logic. The red line in (J) was obtained by setting the GIV amount to 10% of the control cell, matching the low concentration of GIV in shGIV cells. As a reference, the experimental data (i.e., error bars in black and red) and model fit results (curves in blue and red) in Figs
2C and
3G are also displayed here, which were plotted in a same way as in Figs
2C and
3G.