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. 2023 Mar 23;63(7):2226–2239. doi: 10.1021/acs.jcim.3c00168

Figure 12.

Figure 12

Optimized catalytic clusters (RC) for the mechanistic investigation of covalent Mpro inhibition by (PhSe)2, taken from MD snapshots at 46.2 ns (left) and at 88 ns (right). Level of theory: SMD(Water)-B3LYP-D3(BJ)/6-311G(d,p),ccPVTZ.