TABLE 1.
Reassortment analysis of SA coastal seabird H5N8 virus genomes
| Isolate identification | PB2 | PB1 | PA | HA | NP | NA | M | NS | Sub‐genotype |
|---|---|---|---|---|---|---|---|---|---|
| A/Swift tern/South Africa/18010027/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/Swift tern/South Africa/18010028/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/tern/South Africa/18010043/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/tern/South Africa/18010107/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/Jackal buzzard/South Africa/18010106/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/Common tern/South Africa/18010259/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/Sandwich tern/South Africa/18010369/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/Swift tern/South Africa/18010370/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/Common tern/South Africa/18010371/2018 (H5N8) | A | B | C | D | E | F1 | G | H | 4‐2 |
| A/African penguin/South Africa/18010422/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/African penguin/South Africa/18010423/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/tern/South Africa/18010417/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/Swift tern/South Africa/18020273/2018 (H5N8) | A1 | B | C | D | E | F | G | H | 4‐3 |
| A/Sandwich tern/South Africa/18020302/2018 (H5N8) | A | B | C | D | E | F1 | G | H | 4‐2 |
| A/Cape cormorant/South Africa/18020303/2018 (H5N8) | A | B | C | D | E | F1 | G | H | 4‐2 |
| A/African penguin/South Africa/18020304/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/African penguin/South Africa/18020408/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/African penguin/South Africa/476266/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/Crowned cormorant/South Africa/18030213/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/African oystercatcher/South Africa/18030214/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/Swift tern/South Africa/18030478/2018 (H5N8) | A1 | B | C | D | E | F | G | H | 4‐3 |
| A/Hartlaub's gull/South Africa/18040224/2018 (H5N8) | A1 | B | C | D | E | F | G | H | 4‐3 |
| A/Swift tern/South Africa/18040275/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/Hartlaub's gull/South Africa/18040367/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |
| A/African penguin/South Africa/18050256/2018 (H5N8) | A | B | C | D | E | F | G | H | 4‐1 |