Alzheimer’s disease (AD)

Intravenous (IV)

AMP-activated protein kinase (AMPK)

Amyloid precursor protein (APP)

Amyloid-beta (Aβ)

Analysis of Variance (ANOVA)

Citrate synthase (CS)

Cytochrome c oxidase (COX)

Discosoma sp. red fluorescent protein (DsRed)

Familial Alzheimer’s disease (FAD)

Five FAD mutations (5XFAD mice)

Fluoro-Jade C (FJC)

Gamma-Aminobutyric Acid (GABA)

Gene Ontology enRIchment anaLysis analysis and visuaLizAtion tool (GOrilla)

Gene Ontology Term Enrichment (GOTERM)

Histone deacetylase (HDAC)

In vivo imaging system (IVIS)

Insulin-like growth factor-binding protein (Igfbp)

Intracerebroventricular (ICV)

Kyoto Encyclopedia of Genes and Genomes (KEGG)

Label-free quantitation (LFQ)

Least significant difference (LSD)

Liquid chromatography-tandem mass spectrometry (LC-MSMS)

Neuronal nuclei (NeuN)

Partial least square discriminant analysis (PLS-DA)

Peroxisome proliferator-activated receptor (PPAR)

Phosphoinositide 3-kinase (PI3K)

Post-synaptic density (PSD)

Post-translational modification (PTM)

Presenilin1 (PS1)

Red fluorescent protein (RFP)

The Small Molecule Pathway Database (SMPDB)

Transgenic (Tg)

Vascular endothelial growth factor (VEGF)

VIP (measure of a variable’s importance)

Full names of proteins are presented in the Supplemental-proteomics-excels