Table 1. Key resources.
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Bacterial and virus strains | ||
Escherichia coli OP50 | CGC | N/A |
Escherichia coli OP50 (xu363) | [34] | N/A |
Chemicals, peptides, and recombinant proteins | ||
Coenzyme B12 (adenosyl cobalamin) | MilliporeSigma | Cat# C0884 |
N-methyl-N-(trimethylsilyl)trifluoroacetamide (MSTFA) | MilliporeSigma | Cat#M-132 |
Methoxyamine hydrochloride | MilliporeSigma | Cat# 226904 |
DL-3-hydroxybutyric acid sodium salt | MilliporeSigma | Cat# H6501 |
Propionic acid | MilliporeSigma | Cat#81910 |
Sodium propionate (D5, 98%) | Cambridge Isotope Laboratories | Cat#DLM-1601-1 |
L-Lysine monohydrochloride (13C6, 99%) | Cambridge Isotope Laboratories | Cat# CLM-2247-H |
L-Lysine monohydrochloride | MilliporeSigma | Cat# L5626 |
Ethyl acetoacetate | MilliporeSigma | Cat# 00410 |
Ethyl 3-hydroxybutyrate | MilliporeSigma | Cat# E30603 |
Ethyl acetate | MilliporeSigma | Cat# 270989 |
Deposited data | ||
Transcriptome dataset (Effect of mutated dhgd-1(tm6671) on C. elegans metabolism) | This study | https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE201645 |
Experimental models: Organisms/strains | ||
Caenorhabditis elegans N2 (wild type) | CGC | N/A |
Caenorhabditis elegans F54D5.12(tm6671) | [42] | N/A |
Caenorhabditis elegans Pmyo-3::GFPmito; Pmyo-3::lacZ::GFP(nls) | CGC | PD4251 |
Caenorhabditis elegans emb-27(g48) II | Dr. J.E. Irazoqui | GG48 |
Caenorhabditis elegans acdh-1(ok1489) I | CGC | VC1011 |
Caenorhabditis elegans nhr-68(gk708) V | CGC | VC1527 |
Software and algorithms | ||
R: A Language for Data Analysis and Graphics, version 4.1 | http://www.r-project.org | N/A |
WormFlux | http://wormflux.umassmed.edu/ | N/A |
Other | ||
Single quadrupole GC/MS | Agilent Technologies | 5977B GC/MSD |
CGC, Caenorhabditis Genetics Center; GC-MS, gas chromatography–mass spectrometry.