TABLE 2.
Quality statistics for the five Vanessa cardui genomes as estimated by mapping to the reference (ilVanCard2.1, accession GCA_905220365.1): Number of reads, percentage of mapped reads, mean mapping quality, mean coverage, GC content, mean coverage and genomic heterozygosity, calculated with the k‐mer‐based approach in genomescope and the analysis of completeness of the arthropod benchmarking universal single copy ortholog (BUSCO) version 3.0.2 gene set
| Europe | N. America | S. Africa | E. Africa | Asia | |
|---|---|---|---|---|---|
| Number of reads | 171,431,637 | 176,271,556 | 171,520,074 | 226,399,734 | 276,861,301 |
| Mapped reads | 160,199,554 | 163,200,113 | 122,289,727 | 208,310,949 | 259,227,222 |
| Percentage of mapped reads | 93.45 | 92.58 | 71.30 | 92.01 | 93.63 |
| Mean mapping quality | 48.60 | 48.32 | 48.19 | 48.29 | 47.92 |
| Mean coverage | 42.36 | 43.05 | 32.34 | 55.09 | 68.42 |
| GC content (%) | 32.88 | 33.05 | 33.17 | 32.72 | 33.41 |
| Heterozygosity (%) | 3.13 | 2.96 | 2.99 | 2.78 | 2.77 |
| BUSCO complete genes (%) | 999 (98.62%) | 997 (98.42%) | 1001 (98.82%) | 999 (98.62%) | 1000 (98.72%) |
| BUSCO complete + partial genes (%) | 1004 (99.11%) | 1003 (99.01%) | 1006 (99.31%) | 1005 (99.21%) | 1005 (99.21%) |