TABLE 1.
Properties of antibiotic-treated and control transcriptomesa
| Antibiotic | No. of combined clean reads | No. of upregulated genes | No. of downregulated genes | No. of differentially expressed genes (% of genome) |
|---|---|---|---|---|
| TET | 47,210,378 | 1,084 | 1,134 | 2,218 (49.3) |
| MMC | 46,660,344 | 840 | 891 | 1,731 (38.5) |
| IPM | 47,220,294 | 589 | 703 | 1,292 (28.7) |
| CAZ | 45,569,046 | 654 | 719 | 1,373 (30.5) |
| KAN | 41,109,090 | 1,821 | 1,614 | 3,435 (76.5) |
| CIP | 41,592,902 | 1,177 | 1,135 | 2,312 (51.4) |
| PME | 44,994,738 | 78 | 135 | 213 (4.7) |
| ERY | 43,815,626 | 1,010 | 1,000 | 2,010 (44.7) |
| CHL | 55,024,204 | 734 | 760 | 1,494 (33.2) |
| Water | 44,581,540 | NA | NA | NA |
| ETH | 56,837,348 | NA | NA | NA |
a
Three replicates were performed in all cases. NA, not applicable; ETH, ethanol.