Effective population sizes of the six largest drug-resistant clusters. Blue and red dashed lines indicate the estimated acquisition dates of mutations conferring resistance to isoniazid and rifampicin, respectively. Multiple lines indicate the acquisition of mutations on different branches or second mutations conferring resistance to the same drug. Subfigures a to f corresponded to clusters L20_01, L20_08, L20_13, L20_15, L23_04, and L23_13.