Table 1.
Overview of peptide CSD dataset.
| Data source | ||||
|---|---|---|---|---|
| Ours | Confetti | Meier et al. | Total | |
|
| ||||
| LC-MS/MS runs | 20 | 18 | 288 (39*) | 326 (77*) |
|
| ||||
| Total peptides | 264,259 | 166,543 | 416,306 | 847,108 |
|
| ||||
| Unique peptides | 41,594 | 80,402 | 183,340 | 261,667 |
|
| ||||
| Varied parameters | gradient length, voltage, flow rate | protease | organism, protease | |
|
| ||||
| MS instrument | Orbitrap | Orbitrap | timsTOF | |
Breakdown of extracted CSDs from each of the three data sources (ours, Confetti, Meier et al.).
Asterisk (*) indicates the number of LC-MS/MS runs after aggregating over fractionations.