Table 1.
Comparison of metrics from available genome assemblies for Acomys cahirinus.
| Broad Institute (GCA_004027535.1) | Wang et al. (2022) | Current study | ||||
|---|---|---|---|---|---|---|
| Contigs | Scaffolds | Contigs | Scaffolds | Contigs | Scaffolds | |
| Total length | 2.3 Gb | 2.3 Gb | 2.3 Gb | 2.3 Gb | 2.3 Gb | 2.3 Gb |
| Number of sequences | 391,811 | 371,342 | 120 | 108 | 181 | 129 |
| N50 | 42.5 kb | 65.4 kb | 55.0 Mb | nr | 58.8 Mb | 127.8 Mb |
| L50 | 15,859 | 10,134 | na | nr | 16 | 8 |
| Number of gaps (≥5 bp) | 20,469 | nr | 79 | |||
| Complete + partial BUSCOs (Mammalia orthoDBv10) | 83.1% | 94%* | 98.5% | |||
bp, base pairs; kb, kilobase pairs; Mb, megabase pairs; Gb, gigabase pairs; nr, not reported.
*
unknown BUSCO database.