Table 3.
Gene content in the Hickeliinae plastomes.
| Category | Group of gene | Name of gene | |||
|---|---|---|---|---|---|
| Self-replication | Ribosomal RNA genes | rrn4.5a | rrn5a | rrn16a | rrn23a |
| Transfer RNA genes | trnA-UGCa | trnC-GCA | trnD-GUC | trnE-UUC | |
| trnF-GAA | trnfM-CAU∗ | trnG-UCC | trnH-CAU | ||
| trnH-GUGa | trnI-GAUa | trnK-UUU | trnL-CAA | ||
| trnL-UAA | trnL-UAG | trnN-GUUa | trnP-UGG | ||
| trnQ-UUG | trnR-ACGa | trnR-UCU | trnS-GCU | ||
| trnS-GGA | trnS-UGA | trnT-GGU | trnT-UGU | ||
| trnV-GACa | trnV-UAC | trnW-CCA | trnY-GUA | ||
| Small subunit of ribosome | rps2 | rps3 | rps4 | rps7a | |
| rps8 | rps11 | rps12a,b | rps14 | ||
| rps15a | rps16 | rps18 | rps19a | ||
| Large subunit of ribosome | rpl2a | rpl14 | rpl16 | rpl20 | |
| rpl22 | rpl23a | rpl32 | rpl33 | ||
| rpl36 | |||||
| RNA polymerase subunit | rpoA | rpoB | rpoC1 | rpoC2 | |
| Photosynthesis | Subunits of photosystem I | psaA | psaB | psaC | psaI |
| psaJ | |||||
| Subunits of photosystem II | psbA | psbB | psbC | psbD | |
| psbE | psbF | psbH | psbI | ||
| psbJ | psbK | psbL | psbM | ||
| psbN | psbT | psbZ | |||
| Subunits of cytochrome | petA | petB | petD | petG | |
| petL | petN | ||||
| Subunits of ATP synthetase | atpA | atpB | atpE | atpF | |
| atpH | atpI | ||||
| Large subunit of rubisco | rbcL | ||||
| Subunits of NADH | ndhA | ndhBa | ndhC | ndhD | |
| ndhE | ndhF | ndhG | ndhHa | ||
| ndhI | ndhJ | ndhK | |||
| Other gene | Translation initiation factor | infA | |||
| Maturase | matK | ||||
| Envelope membrane protein | cemA | ||||
| C-type cytochrome synthesis gene | ccsA | ||||
| Protease | clpP | ||||
| Unknown function | Conserved open reading frames | ycf3 | ycf4 | ||
a
Two gene copies in IRs.
b
Gene divided into two independent transcription units.
∗
Gene containing one intron.