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. 2023 Mar 28;2(4):pgad104. doi: 10.1093/pnasnexus/pgad104

Table 1.

Summary of the results of the diagnostic analysis and its validation analysis.

Patient ID Pathogenic gene Variants detected in prior genetic analysis Results of diagnostic analysis Genomic variants detected in follow-up analysis Supportive laboratory findings
B1_P21 BTK No pathogenic variants Decreased protein and mRNA expression levels c.-196+1G>T (variant in splice-site and cis-regulatory region) B-cell defects via flow cytometry (0.1% of total lymphocytes)
B1_P22 XIAP No pathogenic variants Decreased protein and mRNA expression levels Large deletion in promoter region (36) Decreased XIAP expression in RT–PCR and WB (36)
B1_P29 ADA2 c.982G>A: p.Glu328Lys (heterozygous) Decreased expression only at the protein level
  • Aberrant splicing with intoronic variant of c.972+102T>G

  • Allele specific expression

Decreased ADA2 activity (37)
B2_P35 LRBA c.1219_1220del: p.Leu408Valfs*7 (heterozygous) Decreased expression only at the protein level Being analyzed
  • Decreased CTLA4 expression in Tregs

  • Decreased LRBA expression via WB

RT–PCR, reverse transcription PCR; WB, Western blotting; CTLA4, cytotoxic T-lymphocyte associated protein 4; Tregs, regulatory T cells.