Table 1.
Disease model | Detection | Impact on systemic immunity | Causality | Refs |
---|---|---|---|---|
Disease: myeloid cancer - preleukemic myeloid proliferation Model: Tet2fl/fl VAVcre |
Culture, sequencing Organs: spleen, mLN, blood |
Spleen: splenomegaly, ↑ GMP cells, ↑CD11b+Gr1+ cells, ↑ IL-6 Blood: ↑GMP cells, ↑CD11b+Gr1+ cells, ↑IL-6 Bone marrow: ↑GMP |
Requirement: ABX in GF mice Sufficiency: DSS, Pam3CSK4 Specificity: TLR-2 signaling | [31] |
Disease: PDAC Model: K-rasLSLG12D/+; Trp53R172H/+; Pdx-1-Cre (KPC) mice |
Culture, imaging, sequencing Organs/tissue: tumor |
Human LTS: Tumor: ↑CD3+ T cells, ↑CD8+ T cells, ↑Granzyme B FMT with LTS feces: Blood: −IL-2, ↑ (IFN)γ Tumor: ↑CD8+ T cells, ↓ MDSCs, ↓FoxP3+ CD4+ Treg cells FMT with STS feces: Tumor: ↑MDSCs, ↑Treg cells |
Requirement: ABX Sufficiency: FMT from human STS/LTS or control donors | [35] |
Disease: PDAC Model: KPC mice; K-rasLSLG12D/+; Pdx-1-Cre (KC) mice |
Imaging, sequencing Organs: pancreas |
Pancreas: ↑Intratumoral fibrosis, ↑pancreatic dysplasia, ↑MDSCs, ↑immunosuppressive TAMs, ↓proinflammatory TAMs, ↓IFNγ + CD4+ T cells (Th1), ↓IFNγ + CD8+ T cells (Tc1), ↓CD3+ T cell infiltration, ↓CD8+:CD4+ T cell ratio | Requirement: ABX, GF mice Sufficiency: FMT KPC feces, Bifidobacterium pseudolongum monocolonization | [36] |
Disease: Cancer Model: Nod2−/− mice; MCA205 sarcoma, MC38 colon carcinoma, TC-1 cervical cancer or RET melanoma |
Culture Organs/tissue: tumor, spleen, mLN |
Spleen: ↑IL-17A producing CD4+ T cells (Th17), ↑IFNγ+ Th17, ↑Thl, ↑Tcl Tumor: E. hirae-induced:↑ CD8+ T cell/Treg cell ratio, ↓Foxp3+Treg cells, ↓IL-17A+ γδT cells B. intestihominis induced: ↑IFNγ+ γδT cells, ↓IL-17A+ γδT cells |
Requirement: ABX Sufficiency: Oral administration of B. intestihominis or E. hirae in B6 or Nod2−/− mice treated with cyclophosphamide Specificity: Comparison to L. johnsonii and B. intestihominis |
[52] |
Disease: Type 1 diabetes Model: Nod2−/− mice |
Culture, sequencing Organs: mLN, pancreatic LN |
Pancreas: ↑Th17, ↑Thl, insulitis Pancreatic LN: ↑ DCs, ↑macrophages, ↑IL-6, ↑IL-12, ↑Thl, ↑Th17 | Requirement: ABX | [72] |
Disease: Model: (NZW × BXSB) F1 mice; autoimmune hepatitis (AIH) patients |
Culture, imaging, sequencing Organs: mesenteric veins, mLN, liver, spleen |
Systemic autoantibodies: ↑Anti-dsDNA IgG, ↑anti-RNA IgG, ↑anti-endogenous retrovirus glycoprotein-70, ↑anti-β2 glycoprotein mLN and spleen: ↑Th17, ↑T follicular helper cells (Tfh) Liver: ↑IFN-α1, ↑IFN-α2, ↑ TNF-α |
Requirement: ABX Sufficiency: E. gallinarum monocolonization of GF C57BL/6 (B6) mice Specificity: Comparison to E. faecalis, B. thetaiotaomicron and S. typhimurium |
[62] |
Disease: SLE Model: TLR7.1 mice; IMQ-treated WT mice |
Culture, sequencing Organs: mesenteric veins, mLN, liver, spleen |
Systemic:↑Type I IFN, ↑plasmacytoid DCs Spleen: Splenomegaly Bone marrow: ↑GMP, ↑common myeloid progenitors, ↑ megakaryocyte-erythrocyte progenitors Kidney: ↑Immune cell infiltration, ↑extramedullary hematopoiesis, nephritis, proteinuria |
Requirement: ABX, GF Sufficiency: FMT of TLR7.1 mice cecal contents, L. reuteri oral administration Specificity: Comparison to L. johnsonii and B. thetaiotamicron |
[63] |
Disease: SLE Model: Triple congenic (TC) B6. Sle1. Sle2. Sle3 |
Culture, sequencing Organs: mLN, liver | Systemic autoantibodies: ↑Anti-dsDNA IgG mLN: ↑Germinal center B cells, ↑Tfh cells Spleen: ↑IFNγ, ↑IL-17A and IL-10 producing CD4+T cells, ↑eftector memory CD4+ T cells, splenomegaly | Requirement: ABX Sufficiency: FMT from aged TC mouse feces into GF B6 mice | [65] |
Disease: Primary sclerosing cholangitis (PSC) Model: DDC-fed WT mice with FMT from PSC patients |
Culture, sequencing Organs: mLN, liver, spleen | Liver: ↑Th17, ↑inflammatory genes (serum amyloid A (Saa) and //1b), ↑fibrosis (Colla, and Tmp1) Blood: ↑SAA, ↑bilirubin, ↑alkaline phosphatase |
Requirement: ABX, pore-forming function of K. pneumonia Sufficiency: GF mice inoculated with K. pneumoniae, P. mirabilis E. gallinarum |
[78] |
Disease: None Model: JH −/−, TLR2−/− 4−/−, TLR4-/ mice |
Culture, sequencing Organs: mLN, liver, blood, spleen |
Mouse blood: tanticommensal IgG (IgG recognizing murein lipoprotein (MLP) antigen) Human blood: ↑Anti-gut commensal IgG, ↑anti-MLP IgG |
Requirement: GF mice; TLR4; bacterial MLP Specificity: Anti-Gram-negative commensal IgG |
[82] |
Abbreviations: ABX, antibiotic treatment; DC, dendritic cell; DDC, 3,5-diethoxycarbonyl-1,4-dihydrocollidine; DSS, dextran sodiumsulfate; FMT, fecalmicrobiota transplant; GF, germ free; GMP, granulocyte–monocyte progenitor; IFN, interferon; Ig, immunoglobulin; IL, interleukin; IMQ, imiquimod; LTS, long-term survivor; MDSC, myeloid derived suppressor cells; mLNs,mesenteric lymph nodes; SLE, systemic lupus erythematosus; STS, short-termsurvivor; TAM, tumor-associated macrophage; Tfh, follicular T cell; TLR, Toll-Like receptor; TNF, tumor necrosis factor; Treg cell, T regulatory cell.