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. 2023 Apr 17;14:2196. doi: 10.1038/s41467-023-37975-y

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — a–c Pearson correlations of alpha diversity indices (richness) between bacteriophages and bacteria at (a) baseline, (b) 6-week, and (c) 6-month. d Spearman correlations of phage-bacteria taxonomy 6-week after the eradication therapy. Rows indicated bacteria genera (n = 49). Columns indicated bacteriophages (n = 60, bacteriophages that infected the same bacteria genus were summed up. For example, Escherichia phage D6, Escherichia phage VEc8, and other viral species that infect Escherichia genus (bacteria) were summed up as Escherichia phages). Only significant correlations (adjusted p < 0.05) were displayed, detailed p-values were included in Supplementary Data 3. The color scale indicated the correlation strength. All the tests were two-sided with BH method for multi comparisons correction.