Figure 6.

Variation of speckle-mediated contacts between genomic segments of $A1$ subcompartments. The left two matrices in the top panel show the average $A1-A1$ contact matrix calculated over the course of the entire trajectory for two independent simulations, and the bottom panel shows the contact matrix calculated at different times within the same trajectory. The matrix on the far right in both panels denotes the standard deviation in the contact matrices. A single trajectory of six million time steps was divided into 10 blocks to obtain the standard deviation matrix shown in the bottom panel. The dissimilarity in $A1$ contacts between different trajectories has a much higher variation compared with the variance in the contacts within a trajectory. To see this figure in color, go online.