Table 1.
Twenty-seven genomes of O. europaea used in the analysis. Columns show taxon, geographical origin, plastid group [11], ploidy level, genomes analysed, and data source
| Taxon (subspecies) | Geographic origin | Plastid group | Ploidy level | Genome analysed | Source |
|---|---|---|---|---|---|
| europaea var. europaea cv. ‘Farga’ | Spain (Boadilla/La Senia) | E3.1 | 2x | nuclear, plastid, mitochondrial | ENA (PRJEB4992) |
| europaea var. europaea cv. 'Lechin de Sevilla' | Spain | E2.3 | 2x | nuclear, plastid, mitochondrial | ENA (PRJEB35540) |
| europaea var. europaea cv. ‘Beladi’ | Lebanon | E1.1 | 2x | nuclear, plastid, mitochondrial | ENA (PRJEB35540) |
| europaea var. sylvestris | Spain (Pechón) | E3 | 2x | nuclear, plastid, mitochondrial | ENA (PRJEB35540) |
| europaea var. sylvestris 'W4R183' | Spain | E1 | 2x | nuclear, plastid, mitochondrial | NCBI (SRR9860503) |
| europaea var. sylvestris 'W3R78' | Spain (Menorca) | E2 | 2x | nuclear, plastid, mitochondrial | NCBI (SRR9860505) |
| europaea var. sylvestris 'Stavrovouni 11' | Cyprus | E1.4 | 2x | plastid | NCBI (HF558645) |
| europaea var. sylvestris 'Haut Atlas 1' | Morocco (High Atlas) | E2 | 2x | plastid | NCBI (NC_015401) |
| europaea var. sylvestris 'Gue de Constantine 20' | Algeria (Gue de Constantine) | E3 | 2x | plastid | NCBI (FN997651) |
| europaea var. sylvestris ‘Oeiras 1’ | Portugal | E3.1 | 2x | plastid | NCBI (MG255763) |
| europaea var. sylvestris ‘Vallee du Fango 5’ | France | E2.1 | 2x | plastid | NCBI (MG255762) |
| maroccanaa | Morocco (Agadir) | M | 6x | nuclear, plastid, mitochondrial | Olive genome project |
| maroccana 'Immouzzer S1' | Morocco (High Atlas) | M | 6x | plastid | NCBI (NC_015623) |
| cerasiformisa | Portugal (Madeira) | M | 4x | nuclear, plastid, mitochondrial | Olive genome project |
| guanchicaa | Spain (Tenerife) | M | 2x | nuclear, plastid, mitochondrial | Olive genome project |
| guanchica ‘La Gomera 10’ | Spain | M-g1 | 2x | plastid | NCBI (MG255764) |
| guanchica-w6 | Spain (Tenerife) | M | 2x | nuclear, plastid, mitochondrial | NCBI (SRR9860513) |
| guanchica-w5 | Spain (Gran Canaria) | M | 2x | nuclear, plastid, mitochondrial | NCBI (SRR9860515) |
| laperrineia | Sahara | E1.1 | 2x | nuclear, plastid, mitochondrial | Olive genome project |
| laperrinei ‘Adjelella 10’ | Algeria | E1-l1 | 2x | plastid | NCBI (MG255765) |
| cuspidata-R | Reunion island | A | 2x | nuclear, plastid, mitochondrial | ENA (PRJEB35540) |
| cuspidata-Sa | South Africa | A | 2x | nuclear, plastid, mitochondrial | Olive genome project |
| cuspidata-Ia | Iran | C1 | 2x | nuclear, plastid, mitochondrial | Olive genome project |
| cuspidata 'Almihwit 5.1' | Yemen | C2 | 2x | plastid | NCBI (FN996943) |
| cuspidata 'Guanghzou 1' | China | C1 | 2x | plastid | NCBI (FN996944) |
| cuspidata 'Maui 1' | USA (Hawaii-Maui) | A | 2x | plastid | NCBI (NC_015604) |
| cuspidata ‘Menagesha Forest 14’ | Ethiopia | C2 | 2x | plastid | NCBI (MG255760) |
aSamples sequenced in this project