Table 1.
Functionally characterized R. gnavus GHs.
| GH family (activity) | Name | Gene accession number | Strain | Substrate | PDB | EC number | References |
|---|---|---|---|---|---|---|---|
| GH2 (β-glucuronidase) | UidA or GusA or RgGUS | GenBank AY307023 | E1 | pNP-β-D-glucuronide | 5Z18-9 6EC6 6JZ1-8 |
3.2.1.31 | Beaud et al. (2005) |
| GH36 (α-galactosidase) | Aga1 | ENA ACL13770.1 | E1 | Melibiose, raffinose, stachyose | 3.2.1.22 | Aguilera et al. (2012), Cervera-Tison et al. (2012) | |
| GH36 (α-galactosidase) | Aga2 | GenBank FO203362 | E1 | Melibiose, raffinose, stachyose | 3.2.1.22 | Cervera-Tison et al. (2012) | |
| GH36 (α-galactosidase) | AgaSK | ENA FQ790379 | E1 | Melibiose, raffinose, stachyose | 2YFN 2YFO |
3.2.1.22 | Bruel et al. (2011), Lafond et al. (2020) |
| GH13_18 (sucrose 6F-phosphate phosphorylase) | RgSPP | ENA FQ790378 | E1 | Sucrose 6F-phosphate | 2.4.1.329 | Tauzin et al. (2019) | |
| GH33 (intramolecular trans-sialidase) | RgNanH | GenBank QEI30999.1 |
ATCC 29149 | α-2,3-sialylconjugates | 4 × 4A 4 × 49 4 × 6 K 4 × 47 |
4.2.2.15 | Tailford et al. (2015) |
| GH98 (blood-group A endo-β-1,4-galactosidase | RgGH98 | GenBank QEI31357.1 |
ATCC 29149 | BgAtetra type II | 7Q20 7PMO 7Q1W |
3.2.1.8 | Wu et al. (2021b) |
| GH29 (α-L-fucosidase) | RUGNEv3_10125 | E1 | pNP-Fuc, 3FL, LeA, LeX | 6TR3 6TR4 |
3.2.1.51 | Wu et al. (2021a) | |
| GH29 (α-L-fucosidase) | RUGNEv3_10180 | E1 | pNP-Fuc, 3FL, LeA, LeX | 3.2.1.51 | Wu et al. (2021a) | ||
| GH29 (α-L-fucosidase) | RUMGNA_03833 | GenBank QEI30547.1 |
ATCC 29149 | pNP-Fuc, 2′FL, 3FL, LeA | 3.2.1.51 | Wu et al. (2021a) | |
| GH95 (α-L-fucosidase) | RUGNEv3_10587 | E1 | pNP-Fuc | 3.2.1.51 | Wu et al. (2021a) | ||
| GH95 (α-L-fucosidase) | RUMGNA_00842 | GenBank AAYG02000007.1 |
ATCC 29149 | pNP-Fuc, 2′FL, 3FL | 3.2.1.51 | Wu et al. (2021a) |