TABLE 1.
Strain information |
Host information |
Epidemiology |
||||||||
---|---|---|---|---|---|---|---|---|---|---|
Isolate name | cps | Serotypeb | Capsule typec | MLSTd | Sourcee | Gender | Age (yrs) | Country | Isolation yr | Calculated |
typea | Prevalencef | |||||||||
GPS_NP_1196 | 36X | 36 | 36B | 8150 | NP swab | Male | Unknown | Nepal | 2009 | 0.25% |
GPS_US_PATH4269 | 36X | 36 | 36B | 6499 | NP swab | Unknown | Unknown | Ethiopia | Unknown | 1.11% |
GPS_RU_10 | 36 | 16/36 | 36A | 4841 | CSF | Female | 59 | Russia | 2012 | 1.13% |
GPS_IN_PN17 | 36 | 9 | 36A | 11394 | Blood | Male | 1 | India | 2011 | 0.62% |
GPS_IN_PO_H45 | 36 | 36 | 36A | Unknown | NP swab | Female | 55 | India | 2016 | |
GPS_IN_PO_H151 | 36 | 28F | 36A | Unknown | NP swab | Female | 67 | India | 2016 |
According to genome sequence alignment to reference capsule biosynthetic (cps) locus nucleotide sequences.
According to quellung reaction or latex agglutination using reference antisera.
Capsule type name given in the current study.
MLST, multilocus sequence typing.
NP, nasopharynx; CSF, cerebrospinal fluid.
Percentage of total GPS project isolates from the respective country putatively expressing the capsule type.