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. 2023 Mar 30;9(4):661–672. doi: 10.1038/s41477-023-01377-1

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 4 — RNA sequencing analysis of transcripts in Col-0 wild type and sig5-3 that respond to a cold treatment at two different times of day. (A) Overlap between cold-responsive transcripts in Col-0 from this study and cold-responsive transcriptome from⁴⁸. (B) Overlap between cold-responsive transcripts in Col-0 or sig5-3 from this study and circadian-regulated transcripts from⁵⁰ and⁴⁹. (C) Overlap between cold-responsive transcripts in Col-0 or sig5-3 from this study and putative HY5 targets³⁷. (D) Overlap between cold-responsive transcripts in Col-0 or sig5-3 from this study and transcripts regulated in response to cold by HY5³⁰. Statistical significance and representation factors were calculated using a hypergeometric test (one-sided; see methods). Experiments used 11-day old seedlings.