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. 2023 Mar 21;26(4):106462. doi: 10.1016/j.isci.2023.106462
REAGENT or RESOURCE SOURCE IDENTIFIER
Chemicals, peptides, and recombinant proteins

Keratinocyte serum-free media (K-SFM) Thermo Fisher Scientific 17005042
Renal Epithelial Cell Growth Medium (REGM) Lonza CC-3190
Penicillin-Streptomycin Thermo Fisher Scientific 15140122
Collagenase IV Sigma-Aldrich C5138
Collagen Coating Solution Sigma-Aldrich 125-50
XF base medium without phenol red Agilent 103335-100
Oligomycin Sigma-Aldrich 75351
Carbonyl cyanide 4-(trifluoromethoxy) phenylhydrazone (FCCP) Sigma-Aldrich C2920
Rotenone Sigma-Aldrich R8875
Antimycin A Sigma-Aldrich A8674
Seahorse XF Plasma Membrane Permeabilizer Agilent 02504-100
D-Glucose-6-Phosphate sodium salt (G6P) Sigma-Aldrich G7879
D-Fructose 1,6-bisphosphate trisodium salt hydrate (F1,6BP) Sigma-Aldrich F6803
D-Glyceraldehyde-3-phosphate solution (G3P) Sigma-Aldrich 39705
D-(-)-3-Phosphoglyceric Acid (sodium salt) (3PG) Cayman Chemical 20123
Phospho(enol)pyruvic acid monosodium salt hydrate (PEP) Sigma-Aldrich P0564
L-(+)-Lactic acid Sigma-Aldrich L1750
Glucose Thermo Fisher Scientific A24940-01
2-deoxy-D-glucose (2-DG) Sigma-Aldrich D8375

Critical commercial assays

Seahorse XF FluxPak (cartridges, microplates, calibrant) Agilent 02416-100
Seahorse XF Real-Time ATP Rate Assay Kit Agilent 103592-100
Pierce™ BCA Protein Assay Kit Thermo Fisher Scientific 23227

Experimental models: Cell lines

Human kidney-2 (HK-2), Male ATCC CRL-2190, RRID:CVCL_0302
Human Renal Proximal Tubule Epithelial Cells (RPTEC), Female Lonza CC-2553-0000560580
Rat glomerular visceral epithelial cells (podocytes) Laboratory of Dr. Yves Gorin N/A (details published in Mol Cell Biol 2013 Vol. 33 Issue 17 Pages 3439-60- https://doi.org/10.1128/MCB.00217-13)
Rat mesangial cells Laboratory of Dr. Yves Gorin N/A (details published in PLoS One 2018 Vol. 13 Issue 11 Pages e0207285- https://doi.org/10.1371/journal.pone.0207285)
C2C12, Female ATCC CRL-1772, RRID:CVCL_0188

Experimental models: Organisms/strains

C57BL/6J mice, males The Jackson Laboratory RRID:IMSR_JAX:000664
BKS.Cg-Dock7m +/+ Leprdb/J mice (db/db), males The Jackson Laboratory RRID:IMSR_JAX:000642

Software and algorithms

Agilent Seahorse XF WAVE Agilent https://www.agilent.com
Seahorse XF Real-Time ATP Rate Assay Report Generator Agilent https://www.agilent.com
Mass Hunter Q-TOF Quantitative Analysis version B.07.01 Software Agilent https://www.agilent.com
Prism 9 GraphPad GraphPad https://www.graphpad.com

Other

Seahorse XFe96 Analyzer Agilent N/A
Agilent 6456 quadrupole time-of-flight (Q-TOF) mass spectrometer coupled to Agilent 1290 High-performance liquid chromatography Agilent N/A