Chemicals, peptides, and recombinant proteins |
|
Keratinocyte serum-free media (K-SFM) |
Thermo Fisher Scientific |
17005042 |
Renal Epithelial Cell Growth Medium (REGM) |
Lonza |
CC-3190 |
Penicillin-Streptomycin |
Thermo Fisher Scientific |
15140122 |
Collagenase IV |
Sigma-Aldrich |
C5138 |
Collagen Coating Solution |
Sigma-Aldrich |
125-50 |
XF base medium without phenol red |
Agilent |
103335-100 |
Oligomycin |
Sigma-Aldrich |
75351 |
Carbonyl cyanide 4-(trifluoromethoxy) phenylhydrazone (FCCP) |
Sigma-Aldrich |
C2920 |
Rotenone |
Sigma-Aldrich |
R8875 |
Antimycin A |
Sigma-Aldrich |
A8674 |
Seahorse XF Plasma Membrane Permeabilizer |
Agilent |
02504-100 |
D-Glucose-6-Phosphate sodium salt (G6P) |
Sigma-Aldrich |
G7879 |
D-Fructose 1,6-bisphosphate trisodium salt hydrate (F1,6BP) |
Sigma-Aldrich |
F6803 |
D-Glyceraldehyde-3-phosphate solution (G3P) |
Sigma-Aldrich |
39705 |
D-(-)-3-Phosphoglyceric Acid (sodium salt) (3PG) |
Cayman Chemical |
20123 |
Phospho(enol)pyruvic acid monosodium salt hydrate (PEP) |
Sigma-Aldrich |
P0564 |
L-(+)-Lactic acid |
Sigma-Aldrich |
L1750 |
Glucose |
Thermo Fisher Scientific |
A24940-01 |
2-deoxy-D-glucose (2-DG) |
Sigma-Aldrich |
D8375 |
|
Critical commercial assays |
|
Seahorse XF FluxPak (cartridges, microplates, calibrant) |
Agilent |
02416-100 |
Seahorse XF Real-Time ATP Rate Assay Kit |
Agilent |
103592-100 |
Pierce™ BCA Protein Assay Kit |
Thermo Fisher Scientific |
23227 |
|
Experimental models: Cell lines |
|
Human kidney-2 (HK-2), Male |
ATCC |
CRL-2190, RRID:CVCL_0302 |
Human Renal Proximal Tubule Epithelial Cells (RPTEC), Female |
Lonza |
CC-2553-0000560580 |
Rat glomerular visceral epithelial cells (podocytes) |
Laboratory of Dr. Yves Gorin |
N/A (details published in Mol Cell Biol 2013 Vol. 33 Issue 17 Pages 3439-60- https://doi.org/10.1128/MCB.00217-13) |
Rat mesangial cells |
Laboratory of Dr. Yves Gorin |
N/A (details published in PLoS One 2018 Vol. 13 Issue 11 Pages e0207285- https://doi.org/10.1371/journal.pone.0207285) |
C2C12, Female |
ATCC |
CRL-1772, RRID:CVCL_0188 |
|
Experimental models: Organisms/strains |
|
C57BL/6J mice, males |
The Jackson Laboratory |
RRID:IMSR_JAX:000664 |
BKS.Cg-Dock7m +/+ Leprdb/J mice (db/db), males |
The Jackson Laboratory |
RRID:IMSR_JAX:000642 |
|
Software and algorithms |
|
Agilent Seahorse XF WAVE |
Agilent |
https://www.agilent.com |
Seahorse XF Real-Time ATP Rate Assay Report Generator |
Agilent |
https://www.agilent.com |
Mass Hunter Q-TOF Quantitative Analysis version B.07.01 Software |
Agilent |
https://www.agilent.com |
Prism 9 GraphPad |
GraphPad |
https://www.graphpad.com |
|
Other |
|
Seahorse XFe96 Analyzer |
Agilent |
N/A |
Agilent 6456 quadrupole time-of-flight (Q-TOF) mass spectrometer coupled to Agilent 1290 High-performance liquid chromatography |
Agilent |
N/A |