Bacterial and virus strains
|
E.coli XL10-GOLD KanR Ultracompetent Cells |
Agilent |
200317 |
E.coli DH10EMBacY Competent Cells |
Geneva Biotech |
DH10EMBacY |
Chemicals, peptides, and recombinant proteins
|
Deuterium Oxide 99.9% |
Sigma |
151882 |
Guanosine 5′-diphosphate (GDP) sodium salt hydrate |
Sigma |
G7127-100MG |
Guanosine 5′-triphosphate (GTP) sodium salt hydrate |
Sigma |
G8877-250MG |
Sodium deoxycholate |
Sigma |
D6750 |
Polyoxyethylene (10) lauryl ether |
Sigma |
P9769 |
CHAPS, Molecular Biology Grade |
EMD Millipore |
220201 |
Phosphatidylserine (Porcine Brain) |
Avanti |
840032C |
Phosphatidylethanolamine (Egg yolk) |
Sigma |
P6386 |
Cholesterol |
Sigma |
47127-U |
Phosphatidylcholine (Egg yolk) |
Avanti |
840051C |
Phosphatidylinositol-4,5-bisphosphate (Porcine Brain) |
Avanti |
840046 |
Sphingomyelin (Egg yolk) |
Sigma |
S0756 |
1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) |
Avanti |
850375C |
1,2-dioleoyl-sn-glycero-3-phospho-L-serine (18:1, DOPS) |
Avanti |
840035C |
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N-[4-(p-maleimidomethyl)cyclohexane-carboxamide] (18:1 MCC-PE) |
Avanti |
780201C |
10 mg/mL beta casein solution |
ThermoFisher |
37528 |
10x PBS [pH 7.4] |
Corning |
46-013-CM |
glucose oxidase from Aspergillus niger (225 U/mg) |
Biophoretics |
B01357.02 |
catalase |
Sigma |
C40-100MG Bovine Liver |
Trolox |
Cayman Chemicals |
10011659 |
Dyomics 647 maleimide dye |
Dyomics |
647P1-03 |
Coenzyme A |
Sigma |
C3019 |
Sulfuric acid |
Sigma |
58105-2.5L-PC |
C-Flat 2/2-T grids |
FisherScientific |
50-192-8327 |
Critical commercial assays
|
Transcreener ADP2 FI Assay (1,000 Assay, 384 Well) |
BellBrook Labs |
3013-1K |
Deposited data
|
PDB coordinate file for p110γ-NB7 structure |
PDB |
8DP0 |
EM density file for p110γ-NB7 complex |
EMD |
EMD-27627 |
HDX-MS and phosphorylation proteomics data |
PRIDE |
PXD040765 |
Oligonucleotides
|
Fwd primer for amplifying KD of PKCβII GTATTTTCAGGGCgccggtaccACGACCAACACTGTCTCCAAATTTG |
Sigma |
MR51F |
Rvs primer for amplifying KD of PKCβII gactcgagcggccgcTTATAGCTCTTGACTTCGGGTTTTAAAAATTCAG |
Sigma |
MR51R |
Fwd primer for amplifying N term of PKCβII CCATCACggatctggcggtagtATGGCTGACCCGGCTGCG |
Sigma |
MR52F |
Rvs primer for amplifying N term of PKCβII GCCCTGAAAATACAGGTTTTCCTTTTCTTCCGGGACCTTGGTTCCC |
Sigma |
MR52R |
Fwd primer for adding stop codon to PKCβII AGTCAAGAGCTAAgcggccgctcgagtctagagcctgc |
Sigma |
MR56F |
Rvs primer for adding stop codon to PKCβII gactcgagcggccgcTTAGCTCTTGACTTCGGGTTTTAAAAATTCAG |
Sigma |
MR56R |
Recombinant DNA
|
pMultiBac-Gβ1/Gγ2 |
PMID:34452907 |
pOP737 |
pACEBac1-hsp110γ |
PMID:34452907 |
MR30 |
pMultiBac-hsp110γ-ssp101 |
PMID:34452907 |
MR22 |
pMultiBac-hsp110γ-mmp84 |
PMID:34452907 |
MR24 |
pFastBac HRas G12V |
PMID:34452907 |
BS9 |
biGBac hsp110γ/ybbr-hsp84 |
PMID:36842083 |
HP28 |
biGBac hsp110γ/ybbr-hsp101 |
PMID:36842083 |
HP29 |
his6-GST-PrescissionProtease-SNAP-RBD(K65E) |
PMID:34452907 |
pSH936 |
his6TEV-HRas(1-184aa) C118S, C181S |
PMID:34452907 |
pSH414 |
his6-Gγ2, SNAP-Gβ1 (DUAL FastBac) |
PMID:34452907 |
pSH651 |
pACEBAC-PKCβII (internal tev cleavage site) |
This paper |
pMR56 |
pFASTBac p110α |
PMID: 28515318 |
pOV1181 |
pFASTBac p110β |
PMID: 28515318 |
pOV1182 |
pFASTBac p110δ |
PMID: 28515318 |
pOV1183 |
pFASTBac p85β |
This paper |
EX21 |
|
|
|
Software and algorithms
|
COOT-0.9.4.1 |
CCP4 |
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
|
Phenix-1.19.1 |
Open source |
https://www.phenix-online.org/
|
PDBePISA (Proteins, Interfaces, Structures and Assemblies) |
EMBL-EBI |
https://www.ebi.ac.uk/pdbe/pisa/pistart.html
|
ESPript 3.0 |
Robert et al NAR 2014 |
https://espript.ibcp.fr
|
HDExaminer |
Sierra Analytics |
http://massspec.com/hdexaminer
|
GraphPad Prism 7 |
GraphPad |
https://www.graphpad.com
|
PyMOL |
Schroedinger |
http://pymol.org
|
Compass Data Analysis |
Bruker |
https://www.bruker.com
|
ChimeraX |
UCSF |
https://www.rbvi.ucsf.edu/chimerax/
|
ImageJ/Fiji |
ImageJ |
https://imagej.net/software/fiji/
|
Nikon NIS elements |
Nikon |
https://www.microscope.healthcare.nikon.com/products/software/nis-elements
|
cryoSPARC v.3.3.2 |
Structura Biotechnology |
https://cryosparc.com/
|
Other
|
Sf9 insect cells for expression |
Expression Systems |
94-001S |
Insect cell media |
Expression Systems |
96-001-01 |
Hellmanex III cleaning solution |
Fisher |
14-385-864 |
6-well sticky-side chamber |
IBIDI |
80608 |