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[Preprint]. 2023 Apr 12:2023.04.12.536585. [Version 1] doi: 10.1101/2023.04.12.536585
Resources table SOURCE IDENTIFIER
Bacterial and virus strains
E.coli XL10-GOLD KanR Ultracompetent Cells Agilent 200317
E.coli DH10EMBacY Competent Cells Geneva Biotech DH10EMBacY
Chemicals, peptides, and recombinant proteins
Deuterium Oxide 99.9% Sigma 151882
Guanosine 5′-diphosphate (GDP) sodium salt hydrate Sigma G7127-100MG
Guanosine 5′-triphosphate (GTP) sodium salt hydrate Sigma G8877-250MG
Sodium deoxycholate Sigma D6750
Polyoxyethylene (10) lauryl ether Sigma P9769
CHAPS, Molecular Biology Grade EMD Millipore 220201
Phosphatidylserine (Porcine Brain) Avanti 840032C
Phosphatidylethanolamine (Egg yolk) Sigma P6386
Cholesterol Sigma 47127-U
Phosphatidylcholine (Egg yolk) Avanti 840051C
Phosphatidylinositol-4,5-bisphosphate (Porcine Brain) Avanti 840046
Sphingomyelin (Egg yolk) Sigma S0756
1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) Avanti 850375C
1,2-dioleoyl-sn-glycero-3-phospho-L-serine (18:1, DOPS) Avanti 840035C
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N-[4-(p-maleimidomethyl)cyclohexane-carboxamide] (18:1 MCC-PE) Avanti 780201C
10 mg/mL beta casein solution ThermoFisher 37528
10x PBS [pH 7.4] Corning 46-013-CM
glucose oxidase from Aspergillus niger (225 U/mg) Biophoretics B01357.02
catalase Sigma C40-100MG Bovine Liver
Trolox Cayman Chemicals 10011659
Dyomics 647 maleimide dye Dyomics 647P1-03
Coenzyme A Sigma C3019
Sulfuric acid Sigma 58105-2.5L-PC
C-Flat 2/2-T grids FisherScientific 50-192-8327
Critical commercial assays
Transcreener ADP2 FI Assay (1,000 Assay, 384 Well) BellBrook Labs 3013-1K
Deposited data
PDB coordinate file for p110γ-NB7 structure PDB 8DP0
EM density file for p110γ-NB7 complex EMD EMD-27627
HDX-MS and phosphorylation proteomics data PRIDE PXD040765
Oligonucleotides
Fwd primer for amplifying KD of PKCβII GTATTTTCAGGGCgccggtaccACGACCAACACTGTCTCCAAATTTG Sigma MR51F
Rvs primer for amplifying KD of PKCβII gactcgagcggccgcTTATAGCTCTTGACTTCGGGTTTTAAAAATTCAG Sigma MR51R
Fwd primer for amplifying N term of PKCβII CCATCACggatctggcggtagtATGGCTGACCCGGCTGCG Sigma MR52F
Rvs primer for amplifying N term of PKCβII GCCCTGAAAATACAGGTTTTCCTTTTCTTCCGGGACCTTGGTTCCC Sigma MR52R
Fwd primer for adding stop codon to PKCβII AGTCAAGAGCTAAgcggccgctcgagtctagagcctgc Sigma MR56F
Rvs primer for adding stop codon to PKCβII gactcgagcggccgcTTAGCTCTTGACTTCGGGTTTTAAAAATTCAG Sigma MR56R
Recombinant DNA
pMultiBac-Gβ1/Gγ2 PMID:34452907 pOP737
pACEBac1-hsp110γ PMID:34452907 MR30
pMultiBac-hsp110γ-ssp101 PMID:34452907 MR22
pMultiBac-hsp110γ-mmp84 PMID:34452907 MR24
pFastBac HRas G12V PMID:34452907 BS9
biGBac hsp110γ/ybbr-hsp84 PMID:36842083 HP28
biGBac hsp110γ/ybbr-hsp101 PMID:36842083 HP29
his6-GST-PrescissionProtease-SNAP-RBD(K65E) PMID:34452907 pSH936
his6TEV-HRas(1-184aa) C118S, C181S PMID:34452907 pSH414
his6-Gγ2, SNAP-Gβ1 (DUAL FastBac) PMID:34452907 pSH651
pACEBAC-PKCβII (internal tev cleavage site) This paper pMR56
pFASTBac p110α PMID: 28515318 pOV1181
pFASTBac p110β PMID: 28515318 pOV1182
pFASTBac p110δ PMID: 28515318 pOV1183
pFASTBac p85β This paper EX21
Software and algorithms
COOT-0.9.4.1 CCP4 https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
Phenix-1.19.1 Open source https://www.phenix-online.org/
PDBePISA (Proteins, Interfaces, Structures and Assemblies) EMBL-EBI https://www.ebi.ac.uk/pdbe/pisa/pistart.html
ESPript 3.0 Robert et al NAR 2014 https://espript.ibcp.fr
HDExaminer Sierra Analytics http://massspec.com/hdexaminer
GraphPad Prism 7 GraphPad https://www.graphpad.com
PyMOL Schroedinger http://pymol.org
Compass Data Analysis Bruker https://www.bruker.com
ChimeraX UCSF https://www.rbvi.ucsf.edu/chimerax/
ImageJ/Fiji ImageJ https://imagej.net/software/fiji/
Nikon NIS elements Nikon https://www.microscope.healthcare.nikon.com/products/software/nis-elements
cryoSPARC v.3.3.2 Structura Biotechnology https://cryosparc.com/
Other
Sf9 insect cells for expression Expression Systems 94-001S
Insect cell media Expression Systems 96-001-01
Hellmanex III cleaning solution Fisher 14-385-864
6-well sticky-side chamber IBIDI 80608