Table 3. The portions of interactions under the original PPI network and GO-PPI network for the YDIP dataset (BP).
| SSMs | Network | Interactions | BC | DC | EC | NC | SC |
|---|---|---|---|---|---|---|---|
| original PPI | Ess-ess | 17.11% | 20.03% | 17.21% | 32.11% | 17.21% | |
| Ess-noness | 37.64% | 35.91% | 37.27% | 28.12% | 37.27% | ||
| Noness-noness | 45.25% | 44.06% | 45.52% | 39.77% | 45.52% | ||
| Jiang | GO-PPI | Ess-ess | 34.85% | 46.72% | 47.32% | 55.98% | 49.46% |
| Ess-noness | 28.34% | 20.12% | 17.41% | 16.87% | 15.94% | ||
| Noness-noness | 36.82% | 33.16% | 35.27% | 27.14% | 34.60% | ||
| Lin | GO-PPI | Ess-ess | 31.87% | 45.07% | 47.65% | 53.64% | 48.64% |
| Ess-noness | 28.85% | 20.15% | 18.05% | 17.38% | 17.42% | ||
| Noness-noness | 39.28% | 34.78% | 34.30% | 28.98% | 33.94% | ||
| Rel | GO-PPI | Ess-ess | 33.51% | 47.71% | 52.74% | 56.22% | 52.50% |
| Ess-noness | 28.95% | 20.18% | 15.10% | 17.12% | 15.59% | ||
| Noness-noness | 37.53% | 32.12% | 32.16% | 26.66% | 31.91% | ||
| Resnik | GO-PPI | Ess-ess | 34.85% | 46.72% | 47.32% | 55.98% | 49.46% |
| Ess-noness | 28.34% | 20.12% | 17.41% | 16.87% | 15.94% | ||
| Noness-noness | 36.82% | 33.16% | 35.27% | 27.14% | 34.60% | ||
| Wang | GO-PPI | Ess-ess | 35.57% | 51.87% | 55.39% | 57.99% | 55.99% |
| Ess-noness | 29.18% | 17.90% | 13.79% | 17.06% | 12.87% | ||
| Noness-noness | 35.24% | 30.23% | 30.81% | 24.95% | 31.14% |