Table 1.
Analysis Software Information of RNA-Sequencing.xls
| Soft/Database | Fastx_Toolkit | Sickle | Stringtie | BLAST+ | Fastp |
| Version | Version 0.0.14 | -- | Version 1.3.3b | Version 2.9.0 | 0.19.5 |
| Soft/Database | Cufflinks | Kallisto | Samtools | SeqPrep | MSigDB data base |
| Version | Version 2.2.1 | Version 0.46.0 | Version 1.9 | -- | Version 6.2 |
| Soft/Database | Bedtools | GSEA | Star_fusion | NCBI species mclassification database | TopHat |
| Version | Version 2.27.1 | Version 3.0 | Version 1.8.1 | Version 2019. | Version v2.1.1 |
| Soft/Database | TransDecoder | maSigPro | PlantTFDB | Diamond | Rfam data base |
| Version | Version 5.5.0 | Version 1.56.0 | Version 4.0 | Version 0.9.24 | Version Rfam v14.1 |
| Soft/Database | KOBAS | GATK | RSEM | STAR | Bowtie2 |
| Version | Version 2.1.1 | Version 3.8 | Version 1.3.1 | Version 2.7.1a | Version 2.3.5 |
| Soft/Database | EdgeR | Blast2go | DESeq2 | STEM | Limma |
| Version | Version 3.24.3 | Version2.5 | Version 1.24.0 | Version 1.3.11 | Version 3.38.3 |
| Soft/Database | KEGG data base | Salmon | WGCNA | AnimalTFDB | PIR idmapping data base |
| Version | Version 2018. | Version 0.14.1 | Version 1.63 | Version 3.0 | Version 2019. |
| Soft/Database | Ipath data base | JASPAR | NOISeq | Hisat2 | DEGSeq |
| Version | Version 3 | Version 2020 | Version 2.18.0 | Version 2.1.0 | Version 1.38.0 |
| Soft/Database | STRING data base | Pfam data base | |||
| Version | Version 11.5 | Version 32 |