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. 2023 Apr 5;26(5):106572. doi: 10.1016/j.isci.2023.106572
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

CD45 Biolegend Cat# 103105; RRID: AB_312970
F4/80 Biolegend Cat# 123116; RRID: AB_893481
CD11b Biolegend Cat# 101227; RRID: AB_893233
Fcrl5 R&D Cat# FAB6757G; RRID: AB_2927459
CD11c Biolegend Cat# 117318; RRID: AB_493568
MHCII Biolegend Cat# 107606; RRID: AB_313321
VEGFR2 Biolegend Cat# 136413; RRID: AB_2561606
Ly-6a Santa Cruz Cat# sc-52601; RRID: AB_630228
F4/80 Santa Cruz Cat# sc-377009; RRID:AB_2927461
Itgad/Cd11d Abbexa Cat# abx101639; RRID: AB_2927460
CD31 Abcam Cat# ab222783; RRID: AB_2905525
vWF Santa Cruz Cat# sc-365712; RRID: AB_10842026
Egr1 Santa Cruz Cat# sc-101033; RRID: AB_1122474

Chemicals, peptides, and recombinant proteins

High-fat diet Research Diets Cat# D12492
Fructose Sigma-Aldrich Cat# F0127
Sucrose Sigma-Aldrich Cat# V900116
Haematoxylin and Eosin dye Servicebio Cat# G1005
Oil Red O dye Sigma-Aldrich Cat# 1320-06-5
Picrosirius red dye Servicebio Cat# GC307014
TRIzol Takara Cat# 9108
SYBR Premix Ex Taq II Takara Cat# RR820A
Red blood cell lysate buffer Miltenyi Biotec Cat# 130-094-183
DAPI Yeason Cat# 40728ES03

Critical commercial assays

Liver Dissociation Kit Miltenyi Biotec Cat# 130-105-807
Fixation/Permeabilization Kit BD Biosciences Cat# 554722
PrimeScript RT Master Mix Kit Takara Cat# RR036A
BD Rhapsody cDNA Kit BD Biosciences Cat# 633773
BD Rhapsody Targeted mRNA&AbSeq Amplification Kit BD Biosciences Cat# 633801

Deposited data

Raw sequencing data National Omics Data Encyclopedia OEP003311

Oligonucleotides

qPCR primers, see Table S1 This paper N/A

Software and algorithms

FlowJo 10 Treestar https://www.flowjo.com/solutions/flowjo
Leica software package Leica N/A
ImageJ software NIH https://imagej.nih.gov/ij/
GraphPad Prism 8 GraphPad Software https://www.graphpad.com/
R package R CRAN http://www.R-project.org/
Seurat Butler et al., 201862; Stuart et al., 201963 https://satijalab.org/seurat/
SingleR (v1.4.1) Aran et al., 201964 https://github.com/dviraran/SingleR
Monocle2 Qiu et al., 201765 https://github.com/cole-trapnell-lab/monocle-release
CellphoneDB Efremova et al., 202066 https://www.cellphonedb.org/