Antibodies |
|
CD45 |
Biolegend |
Cat# 103105; RRID: AB_312970
|
F4/80 |
Biolegend |
Cat# 123116; RRID: AB_893481
|
CD11b |
Biolegend |
Cat# 101227; RRID: AB_893233
|
Fcrl5 |
R&D |
Cat# FAB6757G; RRID: AB_2927459
|
CD11c |
Biolegend |
Cat# 117318; RRID: AB_493568
|
MHCII |
Biolegend |
Cat# 107606; RRID: AB_313321
|
VEGFR2 |
Biolegend |
Cat# 136413; RRID: AB_2561606
|
Ly-6a |
Santa Cruz |
Cat# sc-52601; RRID: AB_630228
|
F4/80 |
Santa Cruz |
Cat# sc-377009; RRID:AB_2927461
|
Itgad/Cd11d |
Abbexa |
Cat# abx101639; RRID: AB_2927460
|
CD31 |
Abcam |
Cat# ab222783; RRID: AB_2905525
|
vWF |
Santa Cruz |
Cat# sc-365712; RRID: AB_10842026
|
Egr1 |
Santa Cruz |
Cat# sc-101033; RRID: AB_1122474
|
|
Chemicals, peptides, and recombinant proteins |
|
High-fat diet |
Research Diets |
Cat# D12492 |
Fructose |
Sigma-Aldrich |
Cat# F0127 |
Sucrose |
Sigma-Aldrich |
Cat# V900116 |
Haematoxylin and Eosin dye |
Servicebio |
Cat# G1005 |
Oil Red O dye |
Sigma-Aldrich |
Cat# 1320-06-5 |
Picrosirius red dye |
Servicebio |
Cat# GC307014
|
TRIzol |
Takara |
Cat# 9108 |
SYBR Premix Ex Taq II |
Takara |
Cat# RR820A |
Red blood cell lysate buffer |
Miltenyi Biotec |
Cat# 130-094-183 |
DAPI |
Yeason |
Cat# 40728ES03 |
|
Critical commercial assays |
|
Liver Dissociation Kit |
Miltenyi Biotec |
Cat# 130-105-807 |
Fixation/Permeabilization Kit |
BD Biosciences |
Cat# 554722 |
PrimeScript RT Master Mix Kit |
Takara |
Cat# RR036A |
BD Rhapsody cDNA Kit |
BD Biosciences |
Cat# 633773 |
BD Rhapsody Targeted mRNA&AbSeq Amplification Kit |
BD Biosciences |
Cat# 633801 |
|
Deposited data |
|
Raw sequencing data |
National Omics Data Encyclopedia |
OEP003311 |
|
Oligonucleotides |
|
qPCR primers, see Table S1
|
This paper |
N/A |
|
Software and algorithms |
|
FlowJo 10 |
Treestar |
https://www.flowjo.com/solutions/flowjo |
Leica software package |
Leica |
N/A |
ImageJ software |
NIH |
https://imagej.nih.gov/ij/ |
GraphPad Prism 8 |
GraphPad Software |
https://www.graphpad.com/ |
R package |
R CRAN |
http://www.R-project.org/ |
Seurat |
Butler et al., 201862; Stuart et al., 201963
|
https://satijalab.org/seurat/ |
SingleR (v1.4.1) |
Aran et al., 201964
|
https://github.com/dviraran/SingleR |
Monocle2 |
Qiu et al., 201765
|
https://github.com/cole-trapnell-lab/monocle-release |
CellphoneDB |
Efremova et al., 202066
|
https://www.cellphonedb.org/ |