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. 2023 Apr 26;18(4):e0272893. doi: 10.1371/journal.pone.0272893

Table 1. Genes encoding LOX, CYP74, AOC, and OPR isoforms of C. sativa and their predicted peptide subcellular localization.

Annotation NCBI Annotation Locus Chromosome Location Sense mRNA Protein AA   DeepLOC LOCALIZER mSubP TargetP
CsLOX1 probable linoleate 9S-lipoxygenase 5 LOC115719608 2 48717953..48726423 - XM_030648706.1 XP_030504566 860   Cytoplasm - Cyto -
CsLOX2 probable linoleate 9S-lipoxygenase 5 LOC115718693 2 48399032..48404403 - XM_030647516.1 XP_030503376 955   Plastid - Plastid -
CsLOX3 probable linoleate 9S-lipoxygenase 5 LOC115724062 9 45035547..45040076 - XM_030653517.1 XP_030509377 872   Cytoplasm - Cyto -
CsLOX4 probable linoleate 9S-lipoxygenase 5 LOC115709296 3 1987993..1993483 + XM_030637370.1 XP_030493230 859   Cytoplasm - Cyto -
CsLOX5 probable linoleate 9S-lipoxygenase 5 LOC115720291 2 48437789..48443653 - XM_030649445.1 XP_030505305 848   Cytoplasm - Cyto -
CsLOX6 probable linoleate 9S-lipoxygenase 5 Isoform X1 LOC115721132 2 48616833..48624053 - XM_030650384.1 XP_030506244 859   Cytoplasm - Cyto -
CsLOX7 probable linoleate 9S-lipoxygenase 5 LOC115719336 2 48633009..48641095 - XM_030648324.1 XP_030504184 871   Cytoplasm - Cyto -
CsLOX8 probable linoleate 9S-lipoxygenase 5 LOC115722276 9 58835655..58849094 + XM_030651442.1 XP_030507302 868   Cytoplasm - Cyto -
CsLOX9 linolate 9S-lipoxygenase 6 LOC115721268 2 3929913..3935080 + XM_030650533.1 XP_030506393 875   Cytoplasm - Cyto -
CsLOX10 probable linoleate 9S-lipoxygenase 5 LOC115722275 9 58804514..58809886 + XM_030651441.1 XP_030507301 868   Cytoplasm - Cyto -
CsLOX11 probable linoleate 9S-lipoxygenase 5 LOC115723988 9 58775266..58790926 + XM_030653445.1 XP_030509305 873   Cytoplasm - Cyto -
CsLOX12 linoleate 9S-lipoxygenase 1 LOC115718785 2 181580..185609 - XM_030647611.1 XP_030503471 838   Mitochondrion Mitochondrion Endoplasm mTP
CsLOX13 lipoxygenase 6, chloroplastic isoform X1 LOC115712696 4 8039511..8043316 + XM_030641024.1 XP_030496884 935   Plastid cTP Plastid cTP
CsLOX14 linoleate 13S-lipoxygenase 3–1, chloroplastic LOC115707105 1 89971772..89976562 - XM_030634953.1 XP_030490813 931   Plastid cTP Plastid -
CsLOX15 linoleate 13S-lipoxygenase 2–1, chloroplastic isoform X1 LOC115719612 2 93914675..93922215 + XM_030648714.1 XP_030504574 929   Plastid cTP Cyto -
CsLOX16 linoleate 13S-lipoxygenase 2–1, chloroplastic LOC115719614 2 93928923..93935412 + XM_030648717.1 XP_030504577 926   Plastid - Cyto -
CsLOX17 linoleate 13S-lipoxygenase 2–1, chloroplastic LOC115720530 2 93947032..93955004 + XM_030649675.1 XP_030505535 1293   Plastid - Plastid -
CsLOX18 linoleate 13S-lipoxygenase 2–1, chloroplastic LOC115719613 2 93802540..93809737 + XM_030648716.1 XP_030504576 929   Plastid cTP Plastid cTP
CsLOX19 linoleate 13S-lipoxygenase 2–1, chloroplastic LOC115719615 2 93892217..93901839 + XM_030648718.1 XP_030504578 922   Plastid cTP Plastid -
CsLOX20 linoleate 13S-lipoxygenase 2–1, chloroplastic LOC115719616 2 93836391..93848870 + XM_030648719.1 XP_030504579 917   Plastid - Plastid -
CsLOX21 linoleate 13S-lipoxygenase 2–1, chloroplastic LOC115719617 2 93822415..93829745 + XM_030648721.1 XP_030504581 909   Plastid cTP Plastid -
                           
CsAOS1 allene oxide synthase 1, chloroplastic-like LOC115723125 9 2271373..2273482 + XM_030652553.1 XP_030508413 525   Plastid cTP Plastid cTP
CsAOS2 allene oxide synthase 3 LOC115703182 X 6627388..6629208 + XM_030630703.1 XP_030486563 482   Peroxisome - Celmemb -
CsAOS3 allene oxide synthase 3 LOC115708244 1 22613465..22615178 + XM_030636464.1 XP_030492324 483   Plastid - Celmemb -
CsAOS4 allene oxide synthase 3 LOC115722144 9 55962020..55963631 + XM_030651275.1 XP_030507135 503   Plastid - Celmemb -
CsAOS5 allene oxide synthase 3 LOC115703186 X 6682344..6684188 - XM_030630707.1 XP_030486567 503   Plastid - Celmemb -
CsHPL fatty acid hydroperoxide lyase, chloroplastic LOC115698766 8 51951025..51958560 + XM_030625939.1 XP_030481799 485   Plastid - Plastid -
                           
CsAOC1 allene oxide cyclase, chloroplastic LOC115701324 8 54784220..54785234 + XM_030629083.1 XP_030484943 183   Cytoplasm - Celmemb -
CsAOC2 allene oxide cyclase, chloroplastic LOC115700991 8 54774852..54776132 - XM_030628671.1 XP_030484531 249   Plastid cTP Plastid cTP
CsAOC3 allene oxide cyclase, chloroplastic LOC115699327 8 35236892..35238108 + XM_030626678.1 XP_030482538 257   Plastid cTP Plastid cTP
                           
CsOPR1 12-oxophytodienoate reductase 3 isoform X1 LOC115706391 1 27999501..28002834 - XM_030634031.1 XP_030489891 452   Peroxisome cTP Plastid -
CsOPR2 LOW QUALITY PROTEIN: 12-oxophytodienoate reductase 3-like LOC115706393 1 27991920..27994962 - XM_030634033.1 XP_030489893 392   Peroxisome - - -
CsOPR3 12-oxophytodienoate reductase 3-like LOC115706394 1 27977420..27994954 - XM_030634034.1 XP_030489894 392   Peroxisome - Cyto -
CsOPR4 12-oxophytodienoate reductase 3-like LOC115703964 1 27889405..27891439 - XM_030631189.1 XP_030487049 392   Peroxisome - Cyto -
CsOPR5 putative 12-oxophytodienoate reductase 11 LOC115722904 9 35363370..35365841 - XM_030652270.1 XP_030508130 371   Peroxisome cTP Cyto cTP