Table 3.
Non-AI pathway/geneset enrichment analysis tools.
| Technique name | Version | Software platforms | # citations | Tutorial website |
|---|---|---|---|---|
| Seurat30 Ranksum | 4.0 | R, DAVID34 | 10,670 | https://satijalab.org/seurat/reference/findallmarkersl |
| Seurat30 MAST | 4.0 | R, DAVID34 | 10,670 | https://satijalab.org/seurat/reference/findallmarkers |
| Seurat30 NegBinom | 4.0 | R, DAVID34 | 10,670 | https://satijalab.org/seurat/reference/findallmarkers |
| singleseqgset101 | R | 104 | https://arc85.github.io/singleseqgset/articles/singleseqgset.html | |
| ssGSEA78 | R | 13 | https://ncborcherding.github.io/vignettes/escape_vignette.html | |
| GSEA20 | 4.3.2 | 35,629 | https://www.gsea-msigdb.org/gsea/doc/GSEAUserGuideFrame.html |