REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Anti-mouse B220-BV711 | BDBiosciences | Cat# 563892 |
Anti-mouse-CD19- APC-R700 | BDBiosciences | Cat# 565473 |
Goat F(ab')2 Anti-Mouse IgM | Southern Biotech | Cat# 1022-01 |
Anti-IgD BV510 | BDBiosciences | Cat# 563110 |
Anti-IgM PE-Cy7 | BDBiosciences | Cat# 552867 |
Anti-IgG1-FITC | BDBiosciences | Cat# 553443 |
Anti-IgG2a/2b-FITC | BDBiosciences | Cat# 553399 |
Anti-IgG3-FITC | BDBiosciences | Cat# 553403 |
Anti-Fas-BV605 | BDBiosciences | Cat#740367 |
Anti-CD38-PEcy5 | eBioscience | Cat# 15-0381-82 |
Goat Anti-Human IgG (HRP) | SeraCare | Cat# 5220-0277 |
Bacterial and virus strains | ||
Chemically competent DH5αEscherichia coli | Thermo Fisher Scientific | Cat#: 12879416 |
Biological samples | ||
Mouse sera, immunized | This study | N/A |
Chemicals, peptides, and recombinant proteins | ||
FreeStyle 293F media | Thermo Fisher Scientific | Cat# 12338026 |
Opti-MEM Reduced Serum Medium | Thermo Fisher Scientific | Cat# 31985070 |
PEI MAX transfection reagent | Polysciences | Cat# 24765-1 |
Lipofectamine 2000 | Life Technologies | Cat# 11668-019 |
Dulbecco’s Modified Eagle Medium | Life Technologies | Cat# 41966052 |
Acetonitrile, 80%, 20% Water with 0.1% Formic Acid, Optima LC/MS | Fisher Scientific | Cat# 15431423 |
Water with 0.1% Formic Acid (v/v), Optima LC/MS Grade | Fisher Scientific | Cat# LS118-212 |
Acetonitrile | Fisher Scientific | Cat# 10489553 |
Trifluoroacetic acid | Fisher Scientific | Cat# 10155347 |
Procainamide hydrochloride | Abcam | Cat# ab120955 |
H2O18 | Sigma-Aldrich | Cat# 329878 |
Dithiothreitol | Sigma-Aldrich | Cat# 43819 |
Iodacetamide | Sigma-Aldrich | Cat# I1149 |
Ammonium formate buffer | Waters | Cat# 186007081 |
Sodium cyanoborohydride | Sigma-Aldrich | Cat# 156159 |
DMSO | Sigma-Aldrich | Cat# D2438 |
Acetic acid | Fisher Scientific | Cat# 10384970 |
Peptide-N-glycosidase F | New England Biolabs | Cat# P0705S |
Endoglycosidase H | New England Biolabs | Cat# P0702S |
Mass spectrometry grade trypsin | Promega | Cat# V5280 |
Sequencing grade chymotrypsin | Promega | Cat# V1061 |
HBS-EP buffer | Cytiva | Cat# BR100188 |
Sensor Chips, CM5 | Cytiva | Cat# 29149604 |
Aqueous buffer, 10mM Glycine-HCl pH2.0 | Cytiva | Cat# BR100355 |
Penicillin | Sigma-Aldrich | P3032-10MU |
Streptomycin | VWR | 382-EU-100G |
GIBCO DPBS | Life Technologies | Cat# 12559069 |
Glycyl Glycine 99+% | Fisher Scientific | Cat# 10540771 |
MgSO4 | VWR | Cat# 10034-99-8 |
TitriPlex III (EDTA) | VWR | Cat# 1.08418.1000 |
Triton X-100 | Fisher Scientific | Cat# BP151500 |
Tris | Sigma-Aldrich | Cat# 10708976001 |
HCl | Biosolve | Cat# 084105 |
Glycine | VWR | Cat# 4500345965 |
Magnesium Chloride (MgCl2) | VWR | Cat# 4500348228 |
Sodium Bicarbonate (NaHCO3) | Life Technologies | Cat# 25080094 |
Sodium Chloride (NaCl) | Sigma-Aldrich | Cat# S7653-1KG |
Sodium Acetate (NaAc) | VWR | Cat# 1.06268.1000 |
Citric Acid Monohydrate | Brunschwig | Cat# 36665.22 |
3,3′,5,5′-Tetramethylbenzidine (TMB) | Sigma-Aldrich | Cat# T-2885 |
H2O2 | Brunschwig | Cat# CP26.1 |
Sulfuric Acid 95-97% | VWR | Cat# 1.00731.1010 |
Sodium Dodecyl Sulfate | Sigma | Cat# L5750-1kg |
Glycerol | Thermo Fisher Scientific | Cat# 15514-011 |
Critical commercial assays | ||
Fluo-4 Direct™ Calcium Assay Kits | Thermo Fisher Scientific | Cat# F10471 |
MiSeq Reagent Kit v3 (600-cycle) | illumina | MS-102-3003 |
Deposited data | ||
BG505 GT1.2 in complex with PGT124 and gl-PGV20 | This study | PDB 81EP |
Next generation sequencing data | This study | NRA: 32312762-32312784 |
Experimental models: Cell lines | ||
HEK293F cells | ThermoFisher Scientific | Cat# R79007 |
Experimental models: Organisms/strains | ||
gl-CH31 knock-in mice | Duke University/DHVI & ABS | N/A |
Oligonucleotides | ||
P5-H10-leader:TCGTCGGCAGCGTCAGATGTG TATAAGAGACAGCTGTCAGTAACTGTAGGTGTGT |
This paper | N/A |
P7-IgM:GTCTCGTGGGCTCGGAGATGTGTATAA GAGACAGCGAGGGGGAAGACATTTGGG |
This paper | N/A |
P7-IgG1: GTCTCGTGGGCTCGGAGATGTGTATA AGAGACAGAGACAGATGGGGGTGTCGTT |
This paper | N/A |
P7-IgG2b: GTCTCGTGGGCTCGGAGATGTGTAT AAGAGACAGAGACTGATGGGGGTGTTGTT |
This paper | N/A |
P7-IgG3: GTCTCGTGGGCTCGGAGATGTGTATA AGAGACAGACAGATGGGGCTGTTGTTGT |
This paper | N/A |
P7-IgA: GTCTCGTGGGCTCGGAGATGTGTATAA GAGACAGTGGTGGGATTTCTCGCAGAC |
This paper | N/A |
P5-ox-leader: TCGTCGGCAGCGTCAGATGTGTA TAAGAGACAGTGCTAATCAGTGCCTCAGTCATAA |
This paper | N/A |
P7-mouse Kappa: GTCTCGTGGGCTCGGAGATG TGTATAAGAGACAGTGGATGGTGGGAAGATGGAT |
This paper | N/A |
Software and algorithms | ||
FlowJo | FlowJo | https://www.bdbiosciences.com/en-us/products/software/flowjo-v10-software |
Prism v8 | Graphpad | https://www.graphpad.com |
Adobe Illustrator 2021 | Adobe | https://www.adobe.com |
R v.4.1.2 | Comprehensive R archive network (CRAN) | https://cran.r-project.org/ |
RStudio 2022.02.3 | RStudio | https://www.rstudio.com/ |
Other | ||
Superdex 200 Increase 10/300 SEC column | Cytiva | Cat# 28-9909-44 |
Vivaspin 20, 100.000 MWCO PES | Sartorius | Cat# VS2042 |
Steritop-GP Filter Unit 0.22μm | Millipore | Cat# SCGPT05RE |
ELISA-plate, half-area, 96W | Greiner Bio One | Cat# 675061 |