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. 2023 Apr 11;4(4):101003. doi: 10.1016/j.xcrm.2023.101003
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-mouse B220-BV711 BDBiosciences Cat# 563892
Anti-mouse-CD19- APC-R700 BDBiosciences Cat# 565473
Goat F(ab')2 Anti-Mouse IgM Southern Biotech Cat# 1022-01
Anti-IgD BV510 BDBiosciences Cat# 563110
Anti-IgM PE-Cy7 BDBiosciences Cat# 552867
Anti-IgG1-FITC BDBiosciences Cat# 553443
Anti-IgG2a/2b-FITC BDBiosciences Cat# 553399
Anti-IgG3-FITC BDBiosciences Cat# 553403
Anti-Fas-BV605 BDBiosciences Cat#740367
Anti-CD38-PEcy5 eBioscience Cat# 15-0381-82
Goat Anti-Human IgG (HRP) SeraCare Cat# 5220-0277

Bacterial and virus strains

Chemically competent DH5αEscherichia coli Thermo Fisher Scientific Cat#: 12879416

Biological samples

Mouse sera, immunized This study N/A

Chemicals, peptides, and recombinant proteins

FreeStyle 293F media Thermo Fisher Scientific Cat# 12338026
Opti-MEM Reduced Serum Medium Thermo Fisher Scientific Cat# 31985070
PEI MAX transfection reagent Polysciences Cat# 24765-1
Lipofectamine 2000 Life Technologies Cat# 11668-019
Dulbecco’s Modified Eagle Medium Life Technologies Cat# 41966052
Acetonitrile, 80%, 20% Water with 0.1% Formic Acid, Optima LC/MS Fisher Scientific Cat# 15431423
Water with 0.1% Formic Acid (v/v), Optima LC/MS Grade Fisher Scientific Cat# LS118-212
Acetonitrile Fisher Scientific Cat# 10489553
Trifluoroacetic acid Fisher Scientific Cat# 10155347
Procainamide hydrochloride Abcam Cat# ab120955
H2O18 Sigma-Aldrich Cat# 329878
Dithiothreitol Sigma-Aldrich Cat# 43819
Iodacetamide Sigma-Aldrich Cat# I1149
Ammonium formate buffer Waters Cat# 186007081
Sodium cyanoborohydride Sigma-Aldrich Cat# 156159
DMSO Sigma-Aldrich Cat# D2438
Acetic acid Fisher Scientific Cat# 10384970
Peptide-N-glycosidase F New England Biolabs Cat# P0705S
Endoglycosidase H New England Biolabs Cat# P0702S
Mass spectrometry grade trypsin Promega Cat# V5280
Sequencing grade chymotrypsin Promega Cat# V1061
HBS-EP buffer Cytiva Cat# BR100188
Sensor Chips, CM5 Cytiva Cat# 29149604
Aqueous buffer, 10mM Glycine-HCl pH2.0 Cytiva Cat# BR100355
Penicillin Sigma-Aldrich P3032-10MU
Streptomycin VWR 382-EU-100G
GIBCO DPBS Life Technologies Cat# 12559069
Glycyl Glycine 99+% Fisher Scientific Cat# 10540771
MgSO4 VWR Cat# 10034-99-8
TitriPlex III (EDTA) VWR Cat# 1.08418.1000
Triton X-100 Fisher Scientific Cat# BP151500
Tris Sigma-Aldrich Cat# 10708976001
HCl Biosolve Cat# 084105
Glycine VWR Cat# 4500345965
Magnesium Chloride (MgCl2) VWR Cat# 4500348228
Sodium Bicarbonate (NaHCO3) Life Technologies Cat# 25080094
Sodium Chloride (NaCl) Sigma-Aldrich Cat# S7653-1KG
Sodium Acetate (NaAc) VWR Cat# 1.06268.1000
Citric Acid Monohydrate Brunschwig Cat# 36665.22
3,3′,5,5′-Tetramethylbenzidine (TMB) Sigma-Aldrich Cat# T-2885
H2O2 Brunschwig Cat# CP26.1
Sulfuric Acid 95-97% VWR Cat# 1.00731.1010
Sodium Dodecyl Sulfate Sigma Cat# L5750-1kg
Glycerol Thermo Fisher Scientific Cat# 15514-011

Critical commercial assays

Fluo-4 Direct™ Calcium Assay Kits Thermo Fisher Scientific Cat# F10471
MiSeq Reagent Kit v3 (600-cycle) illumina MS-102-3003

Deposited data

BG505 GT1.2 in complex with PGT124 and gl-PGV20 This study PDB 81EP
Next generation sequencing data This study NRA: 32312762-32312784

Experimental models: Cell lines
HEK293F cells ThermoFisher Scientific Cat# R79007

Experimental models: Organisms/strains

gl-CH31 knock-in mice Duke University/DHVI & ABS N/A

Oligonucleotides

P5-H10-leader:TCGTCGGCAGCGTCAGATGTG
TATAAGAGACAGCTGTCAGTAACTGTAGGTGTGT
This paper N/A
P7-IgM:GTCTCGTGGGCTCGGAGATGTGTATAA
GAGACAGCGAGGGGGAAGACATTTGGG
This paper N/A
P7-IgG1: GTCTCGTGGGCTCGGAGATGTGTATA
AGAGACAGAGACAGATGGGGGTGTCGTT
This paper N/A
P7-IgG2b: GTCTCGTGGGCTCGGAGATGTGTAT
AAGAGACAGAGACTGATGGGGGTGTTGTT
This paper N/A
P7-IgG3: GTCTCGTGGGCTCGGAGATGTGTATA
AGAGACAGACAGATGGGGCTGTTGTTGT
This paper N/A
P7-IgA: GTCTCGTGGGCTCGGAGATGTGTATAA
GAGACAGTGGTGGGATTTCTCGCAGAC
This paper N/A
P5-ox-leader: TCGTCGGCAGCGTCAGATGTGTA
TAAGAGACAGTGCTAATCAGTGCCTCAGTCATAA
This paper N/A
P7-mouse Kappa: GTCTCGTGGGCTCGGAGATG
TGTATAAGAGACAGTGGATGGTGGGAAGATGGAT
This paper N/A

Software and algorithms

FlowJo FlowJo https://www.bdbiosciences.com/en-us/products/software/flowjo-v10-software
Prism v8 Graphpad https://www.graphpad.com
Adobe Illustrator 2021 Adobe https://www.adobe.com
R v.4.1.2 Comprehensive R archive network (CRAN) https://cran.r-project.org/
RStudio 2022.02.3 RStudio https://www.rstudio.com/

Other

Superdex 200 Increase 10/300 SEC column Cytiva Cat# 28-9909-44
Vivaspin 20, 100.000 MWCO PES Sartorius Cat# VS2042
Steritop-GP Filter Unit 0.22μm Millipore Cat# SCGPT05RE
ELISA-plate, half-area, 96W Greiner Bio One Cat# 675061