Table 2.
Identification of potential recombination events in the full-length genome of Lagoviruses isolated during 1988–2021 globally.
| Event Serial Number | Recombinant | Minor Parent | Major Parent | Detection Methods | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GenBank ID: Virus Name (Country-Year) | Genotype | GenBank ID: Virus Name (Country-Year) | Genotype | GenBank ID: Virus Name (Country-Year) | Genotype | R | G | B | M | C | S | T | |
| 1 | LR899190.1:RHDV/GER-SN/EI205.L03564/2017(Germany) | GI.2e | LR899142.1:RHDV/GER-NW/EI17-1.L03577/2019 (Germany) | GI.2c | MT819375.1:RHDV/EuropeanRabbit/Sweden/03VLT001218 (Swden-2003-Rabbit) | GI.2b | + | + | + | + | + | + | + |
| 2 | MN737112.1:RHDV2_GI.2/O_cun/FR/2013/13-165(France-2013-Rabbit) | GI.1d | LR899187.1:RHDV/GER_NW/D144-2.L01046/2014 (Germany) | GI.2c | JX886001.1:CB194_Pt (Potugal-2006-Rabbit) | GI.1d | + | + | + | + | + | + | + |
| 3 | * Z29514.1:RHDV-SD(France-1993) | GI.1d | KY765610.1:P19 (Portugal-1994-Rabbit) | GI.2a | EF363035.1:pJG-RHDV-DD06 (Germany-2007) | GI.1b | + | + | − | + | + | + | + |
| 4 | LR899163.1:RHDV/GER-NW/EI70-1.L03601/2016(Germany) | GI.2f | KM878681.1:RHDV-N11 (Spain-2014-Rabbit) | GI.2c | LR899186.1:RHDV/GER-NW/D61-2.L00910/2014 (Germany) | GI.2f | + | + | + | + | + | + | + |
| 5 | * MN853658.1:F77-3(Pland-2015-Rabbit) | GI.1a | MN478485.1:GS/YZ (China-2011-Deer) | GI.1c | JF412629.1:HYD (China-2005-Rabbit) | GI.1a | + | − | + | − | − | + | + |
| 6 | KX357655.1:RCV_AUS/ACT/Gudg-26/2013(Autralia-2013) | RCV | KX357681.1:RCV_AUS/NSW/OAK NT-12/2011 (Autralia-2011) | RCV | KX357663.1:RCV_AUS/ACT/GUN-238/2012 (Autralia-2012) | RCV | + | + | + | + | + | + | + |
R, RDP; G, GENECONV; B, BootScan; M, MaxChi; C, Chimaera; S, SiScan; T, 3Seq. +, verified; −, not verified. * The major or minor parent may be the actual recombinant due to the possibility of misidentification.