Extended Data Fig. 3.

Evaluation of the TP, FN, and FP SV calls in the HG002 benchmark. a. Histogram showing the number of occurrences of the TP and FN SV calls in gnomAD-SV for each tool. SVs with no match in gnomAD-SV are collected in the zeroth bin. b. TP and FN calls broken down by frequency in gnomAD-SV and genome context. c. Recall-Precision curves generated using the SV quality thresholds reported in the QUAL VCF field. d. The Recall-Precision curve of Cue annotated with a subset of reported SV quality values.