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. 2023 Mar 9;3(3):327–345. doi: 10.1038/s43587-023-00373-6

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 5 — a. Violin plot and boxplot showing the number of cells analyzed by animal after cell filtering, in which all cells were successfully assigned to a specific cell type. Each dot represents one animal. Boxplot minimum is the smallest value within 1.5 times the interquartile range below the 25^th percentile, maximum is the largest value within 1.5 times the interquartile range above the 75^th percentile. Boxplot center is the 50^th percentile (median), box bounds are the 25^th and 75^th percentile. b-e. Violin plots showing QC metrics, plots in (b, c) showing aggregated data of cells of all brain types, while plots in (d, e) showing individual cell data separated by animal type: (b, d) showing nCount RNA (UMI) per cell type. (c, e) showing nFeature RNA (number of unique genes) detected per cell.