Table 1.

Resistance gene identification.

RGI criteria	ARO term	SNP	Detection criteria	AMR gene family	Drug class	Resistance mechanism	% identity of matching region	% length of reference sequence
Strict	VanY gene in vanB cluster		Protein homology model	vanY, glycopeptide resistance gene cluster	Glycopeptide antibiotic	Antibiotic target alteration	31.33	91.42