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. 2023 May 5;4(2):102326. doi: 10.1016/j.xpro.2023.102326

Table 2.

Data collection, processing and refinement statistics (PDB code 8CDC)

8CDC
Data collection and processing

Wavelength (Å) 0.9762
Detector EIGER 16M
Crystal-to-Detector distance (mm) 180.413
Oscillation angle (degrees) 0.1
Number of images 3600
Space group C121
Unit cell (a, b, c, Å) 114.1 53.5 44.6
Resolution range (Å)a 55.57 - 1.54 (1.57 - 1.54)
Total number of reflectionsa 254428 (12272)
Unique reflectionsa 38825 (1885)
Multiplicitya 6.6 (6.5)
Completenessa (%) 100.0 (100.0)
Rsyma,b (%) 4.7 (96.1)
Rpima,c28 (%) 3.0 (62.1)
Mean I half-set correlation CC(1/2)a 0.999 (0.758)
Mean I/σ(I)a 15.3 (1.6)

Refinement statistics

Number of monomers in the asymmetric unit 1
Rfactord (%) 18.5
Rfreed (%) 23.9
Cruickshank’s DPI for coordinate errore based on Rfactor (Å) 0.097
Wilson plot B-factor (Å2) 22.7
Average all atom B-factor (Å2) 28.1
RMS (bonds)d 0.013
RMS (angles)d 1.81
Total number of atoms 2574
Total number of water molecules 294
Solvent content (%) 36.40
Matthews Coefficient (Å3/Da) 1.93

Ramachandran plot

Most favored regions (%) 97.0
Additionally allowed regions (%) 2.6
Disallowed regions (%) 0.4
a

Highest resolution bin in parentheses;

b

Rsym=hklj|IjI|/hkljIj , where I is the intensity of a reflection, and I is the mean intensity of all symmetry related reflections j;

c

Rp.i.m.=hkl{[1/(N1)]1/2j|IjI|}/hkljIj, where I is the intensity of a reflection, and I is the mean intensity of all symmetry related reflections j, and N is the multiplicity28272827282828282726252626272727272727272625242322222118;

d

Taken from REFMAC; Rfree is calculated using 5% of the total reflections that were randomly selected and excluded from refinement;

e

DPI=Rfactor·Dmax·compl13Natoms(NreflNparams), where Natoms is the number of the atoms included in the refinement, Nrefl is the number of the reflections included in the refinement, Dmax is the maximum resolution of reflections included in the refinement, compl is the completeness of the observed data, and for isotropic refinement, Nparams ≈ 4Natoms